Ochrobactrum quorumnocens: CES85_0984
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Entry
CES85_0984 CDS
T05040
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
och
Ochrobactrum quorumnocens
Pathway
och03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
och00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CES85_0984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
och03019
]
CES85_0984
03009 Ribosome biogenesis [BR:
och03009
]
CES85_0984
Enzymes [BR:
och01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CES85_0984
Messenger RNA biogenesis [BR:
och03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CES85_0984
Ribosome biogenesis [BR:
och03009
]
Prokaryotic type
rRNA processing factors
CES85_0984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
ASV85145
UniProt:
A0A248UEJ7
LinkDB
All DBs
Position
1:complement(933472..936237)
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AA seq
921 aa
AA seq
DB search
MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARSEDDEDEPKAKNNDRSRRHRRR
GRRDGQNGDSQSNVARNGLPAAEPVGPDFANYVPGTPAIALMKQAGHVISEAIDADNGDD
DDDSEVENEEDMVESVGSEDAMEELPSHSRTNRRQYNIQEVIKRRQIILVQVVKEERGNK
GAALTTYLSLAGRYSVLMPNTARGGGISRKIINPQDRKRLKEIVKELEVPQGMGVILRTA
GANRTKAEVKRDYEYLMRMWENVRSLTLQSTAPALVYEEGSLIKRSIRDLYNKDITEILV
AGENGYREAKDFMRMLMPSHAKVVQPYREPVPVFTRYGLEAQLDRMLLPQVTLKSGGYLI
INQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDMEE
KRNNRAVEKKMKDCLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCQHCGGTGH
IRSDSSMALHIIRGIEDYLLRHSGYDIVVRTPAASALYVLNNKRQLLADLEGRFGANISI
DADESVGHQHFVIDKGAPSTRPVTIQPVQPMVYEDDFEDPEIPLEDDEAEEEIKAEPQAR
EESSEEGDRKRRRRRRRRGGRDREQTEQTESGAEAADEDGDEDEDTSPQSNASLSEEDRR
KKRRRGRRGGRKNRREDEIQVKKVPDAEPVGYTPVFPPKAEEKAAEAVVSEAIAVETVTV
EVVAAVEASAAEAGEKPAKPTRKPRGRKAAKSEEVASDEVVAVEAVEEPAKPARKTRSRK
KLAEEEAPVEAAAPAEEAEEIKPKRRTRKAAAKPEVEEAVVEADVAPAAEPQKVSEPVVT
SSETEEQKPKRGGWWQKKGFF
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaaaatgcttatagatgcctcccacccggaggagacccgcgtcatcgtaacg
cgtggcaacaagattgaagaattcgacttcgagtcagagcacaagaagcagctaaagggt
aatatttatctcgcacgcgtcacccgcgtcgaaccctctcttcaggctgctttcgtggaa
tatggcggcaatcgccatggcttcctcgctttttctgaaatccatccggattattatcag
atccctgttgctgatcgtttagccttgctcgaagcggaagccaaagctgcccggagcgaa
gacgacgaagacgaaccaaaggccaagaacaacgatcgttcgcgtcgccatcgccgtcgt
ggacgtcgtgatggtcagaatggtgattcgcaatcaaacgtagcccgtaacggcctgcct
gctgcagaaccagtcggacctgattttgcaaactatgtaccaggtacgccagccatcgca
ctgatgaagcaggctggccatgtcatttcagaagccatcgacgctgacaatggtgacgat
gacgacgattcggaagtcgagaacgaagaagacatggttgaatcggttggttccgaggat
gcgatggaagaacttccttcgcatagccgcaccaatcgccgtcagtacaacattcaggaa
gtcatcaagcgccgccagatcattctggtacaggtggtcaaggaagagcgcggcaataag
ggcgctgctctgacgacctatctgtcgctcgctggtcgctattccgtcttgatgccaaac
accgctcgcggtggtggtatttcgcgcaagatcatcaatccgcaggaccgcaagcgcctc
aaggaaatcgtcaaggaactcgaagtgccgcagggcatgggcgtgatcctgcgtacggca
ggtgccaaccgcaccaaagccgaagtaaagcgcgattatgaatatctgatgcgcatgtgg
gagaacgtgcgttcgctgacgctgcaatcgactgcgcctgccctcgtttatgaggaaggc
agcctgatcaagcgctcgatccgtgatctttataataaagacatcaccgagattctggtc
gcaggtgaaaacggttatcgcgaagcgaaagacttcatgcgcatgctcatgccgagccac
gccaaggtcgttcagccttaccgcgaaccagttcctgtcttcacgcgctatggccttgaa
gcacagcttgatcgtatgcttctgccacaggtaacgctgaaatccggcggctatctcatt
atcaaccagaccgaagcgctggttgcgatagatgttaactcgggtcgttcaacccgcgaa
cattcgatcgaagacacggctctccagaccaatctggaagcggccgaagaagtcgcgcgt
cagctgcgtctgcgcgaccttgccggtctgatcgttgtcgacttcatcgacatggaagaa
aagcgcaacaatcgcgctgtcgaaaagaagatgaaggattgcctcaaggacgaccgggct
cgcattcaggtgggccgcatttcgcatttcggccttctcgaaatgtcgcgccagcgtatc
cgcgcatcggttcttgaaagcacgatgcaggtttgccagcattgcggcggtacaggacat
atccgttctgactcctcaatggctctgcatatcatccgtggcattgaagattatctcctg
cgtcattcgggttacgacatcgtcgttcgcacccctgccgcatcggctctttatgtgctg
aacaacaagcgccagctgttggctgatctggaaggtcgtttcggcgccaatatcagcatt
gacgcagatgaaagcgttggtcatcagcatttcgtcatcgataagggcgcaccttcgaca
cgtcctgtaaccattcagcctgtgcagccgatggtttatgaagatgatttcgaagatcct
gaaattccgcttgaggacgacgaagccgaagaagaaatcaaggctgaaccgcaagctcgc
gaagaaagcagcgaagaaggcgatcgcaagcgtcgtcgtcgtcgccgccgtcgcggtggt
cgtgatcgcgaacagacggaacagactgaatccggtgcagaagctgcggacgaagatggc
gatgaggacgaagataccagccctcagagcaacgcttcgctgagcgaagaagatcgtcgc
aagaagcgtcgccgtggtcgccgtggcggacgcaagaaccgtcgcgaagacgaaattcag
gtcaagaaagtacctgatgctgagccagtaggctacacgcccgtcttcccgccaaaggca
gaagaaaaagctgctgaagccgtcgtcagtgaagccattgctgttgaaacggtcacggtt
gaggtggttgcggctgttgaagcatcagctgctgaagctggcgaaaagcctgcaaagcca
actcgcaagccacgtggccgcaaggctgcgaaaagcgaagaggttgcttcggacgaagtt
gttgcagtcgaagcagtagaagagcctgcaaagcccgcgcgcaagacacgttcgcgtaag
aagctcgcagaggaagaagctcctgtagaagcggccgcaccggctgaagaagcagaagag
atcaagccaaagcgccgcacccgcaaggcagccgccaagccggaagtggaagaagctgtt
gttgaggccgatgttgctcctgctgctgaaccacagaaggtttccgagcccgtcgtcacc
tccagtgaaaccgaagagcagaagccaaagcgtggtggttggtggcagaaaaagggcttt
ttctaa
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