Ochrobactrum quorumnocens: CES85_1174
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Entry
CES85_1174 CDS
T05040
Name
(GenBank) helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
och
Ochrobactrum quorumnocens
Pathway
och03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
och00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CES85_1174
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
och03019
]
CES85_1174
Enzymes [BR:
och01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CES85_1174
Messenger RNA biogenesis [BR:
och03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CES85_1174
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HEM4
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ASV86189
UniProt:
A0A248UIT4
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All DBs
Position
1:1113027..1114424
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AA seq
465 aa
AA seq
DB search
MTIETIGENTGGFAALGVTGVLLKGVEAAGMTEPKPIQTQAIPHQLEGRDILGIAQTGSG
KTAAFSLPILQKIIALGDKRKGKTARALILAPTRELAVQIEETIRTVAKQAHVSTALILG
GVSRLSQIKRMQGGVDVLIATPGRLTDLVRENCVDLSETRWLVLDEADRMLDMGFINDVK
RIAKGTHKNRQTALFSATMPKEIATLAQSLLRDPVRVEVAPQGTTAAEITQVVHPVPTKD
KRRLLSGLLSDQTLKSVIVFTRTKHGADAVVRHLERDGFNVAAIHGNKSQNARQRALNGF
RDGSLRILVATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITLYDQ
ATEDSKLRAVERVTRNKLTIKEAPVKLAPAPAARADDDQKPQQNRRPGSHSVPQKHRRPA
SKMAQKSGEHRANPAAKPAAGEGAAKPKRPFHRKRRDGGGGQRVA
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
ttgactatcgaaactattggcgaaaacaccggcggctttgccgctctgggtgtcacgggc
gttttgcttaagggcgttgaagccgctggcatgaccgaaccaaagcctattcagacacag
gccattccgcatcagctggaaggccgcgatattctgggtattgctcagaccggctcgggc
aaaaccgctgcattcagcctgcctattctccagaagatcattgcacttggcgacaagcgc
aaaggcaagactgcgcgcgcgctgatccttgcaccgacacgcgaactcgctgtgcagatc
gaagaaacgatccgcacggttgccaagcaggcgcatgtttcaactgcacttattctcggc
ggtgtgtcgcgactgagccagatcaagcgtatgcagggcggcgttgacgttctcatcgca
acgccaggccgtttgacagatctcgtacgcgaaaattgcgttgatctgtcagaaacccgc
tggctggttctcgatgaagccgaccgcatgctcgacatgggcttcatcaatgatgtgaag
cgcattgccaaaggcacgcataagaaccgccagacagctctgttctcggcaaccatgcca
aaggaaatcgcaacgctcgcacagagccttctgcgcgatcctgtacgggttgaagttgca
ccacagggtacaactgctgctgaaatcacgcaggtcgtgcatccggtgcctaccaaggac
aagcgtcgtcttctctcaggtctgttgtcggatcagactctgaagtcggttatcgtcttc
acacgcaccaaacatggtgccgatgctgttgttcgccatctggaacgcgatggttttaat
gttgcagctattcacggcaacaaatcgcagaatgcccgccagcgtgcgctgaatggcttc
cgcgatggctcattgcgcattctggttgcaaccgacattgcagcacgcggcatcgacgtt
ccgggtatcagccatgtcgtcaattacgacctgccagacgaaccggaaacctatgtgcac
cgtattggtcgtactggccgtaacggcgcaagcggcgcttcgatcacgctttacgatcag
gcaacggaagattcgaagctccgtgctgttgaacgcgtcacgcgtaacaagctgacgatc
aaggaagctccggttaagcttgcaccagcaccggcagcaagagctgacgacgaccagaag
ccacagcagaaccgcagacccggttcgcatagcgtgccgcagaagcaccgtcgtccagca
agcaagatggcgcaaaagtccggtgaacatcgtgcaaatcctgctgccaagccagccgct
ggtgaaggcgctgcaaagccaaaacgtccattccatcgcaagcgtcgcgatggcggtggt
ggccagcgcgtagcttaa
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