Ochrobactrum quorumnocens: CES85_1352
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Entry
CES85_1352 CDS
T05040
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
och
Ochrobactrum quorumnocens
Pathway
och03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
och00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CES85_1352 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
och03021
]
CES85_1352 (rpoA)
03400 DNA repair and recombination proteins [BR:
och03400
]
CES85_1352 (rpoA)
Enzymes [BR:
och01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CES85_1352 (rpoA)
Transcription machinery [BR:
och03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CES85_1352 (rpoA)
DNA repair and recombination proteins [BR:
och03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CES85_1352 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
Stirrup
IDH
Motif
Other DBs
NCBI-ProteinID:
ASV87669
LinkDB
All DBs
Position
1:complement(1286736..1287749)
Genome browser
AA seq
337 aa
AA seq
DB search
MIQKNWQELIKPNKVEFNTNGSRTLATVVAEPLERGFGLTLGNALRRVLLSSLRGAAVTA
IQIDGVLHEFSSIPGVREDTTDIVLNVKEIAIRMEGEGPKRMVVRKEGPGVVTAGDIQTV
GDVEILNPDHVICTLDEGAEIRMEFTVNTGKGYVPADRNRAEDAPIGLIPVDSLYSPIRK
VSYKIENTREGQVLDYDKLTLNIETNGSVSGEDAVAYAARILQDQLAVFVNFEEPQKEAP
QEQVAELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSL
NEIKEVLASMGLHLGMEIPAWPPENIEDLAKRYEDQY
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgatccagaagaactggcaggaactgatcaagccgaacaaggtggagttcaacaccaac
ggctctcgcacgcttgcaaccgtcgttgctgagccgctggaacgcggttttggtctgacg
cttggtaacgcactgcgtcgcgtgcttctgtcgtcgctgcgcggcgctgccgtgaccgcc
attcagattgatggcgttctgcatgaattctcttccattccgggtgtccgcgaagacacc
acggatatcgttctgaacgtcaaggaaatcgccatccgtatggaaggtgaaggcccgaag
cgcatggttgtccgcaaggaaggcccgggcgttgttacggctggtgacattcagaccgtt
ggcgatgtcgagatccttaatccggatcacgtcatttgcacgctggatgaaggcgctgaa
atccgcatggaattcaccgttaacaccggtaagggctatgtgcctgccgaccgtaatcgt
gcggaagatgctccaatcggccttattccggttgacagcctttactcgccgatccgcaag
gtatcgtacaagattgagaacacccgtgaaggtcaggttctcgattacgacaagctgacg
ctcaacatcgaaaccaatggttccgtgagcggtgaagatgcagttgcttatgcagcgcgc
attcttcaggaccagctcgcggtcttcgtcaacttcgaagagccacagaaggaagctccg
caggaacaggttgcggaactggctttcaacccggctctgctcaagaaggtagacgagctc
gaattgtcggtacgttcggcaaactgcctgaagaacgacaacatcgtctacatcggcgat
ctgatccagaagacggaagccgagatgttgcggactccgaatttcggccgcaagtcgctc
aacgagatcaaggaagttctggcatcgatgggtctccatcttggtatggaaatcccagcc
tggccgccagaaaacatcgaagatctcgccaagcgctacgaagaccaatattaa
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