Ochrobactrum quorumnocens: CES85_1383
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Entry
CES85_1383 CDS
T05040
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
och
Ochrobactrum quorumnocens
Pathway
och03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
och00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CES85_1383 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
och03021
]
CES85_1383 (rpoC)
03400 DNA repair and recombination proteins [BR:
och03400
]
CES85_1383 (rpoC)
Enzymes [BR:
och01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CES85_1383 (rpoC)
Transcription machinery [BR:
och03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CES85_1383 (rpoC)
DNA repair and recombination proteins [BR:
och03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CES85_1383 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
ASV85755
UniProt:
A0A248UG91
LinkDB
All DBs
Position
1:complement(1305994..1310196)
Genome browser
AA seq
1400 aa
AA seq
DB search
MNQEVMNLFNPQAPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTSLKEHQLLSEEEYMIAVDEFGEDQFTA
LIGAEAIFELLASMELEKIAADLRVDLAETTSELKTKKLMKRLKIVENFLESGNRPEWMI
MKIVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVAEKEPGEGMMFADMGELQHALE
NKVVTLHTKIKGRFKTVDAEGNVVSKVYDTTPGRLITGELLPKHVNVPFDICNQEMTKKN
ISKMIDHVYRHCGQKETVIFCDRIMQLGFAHACRAGISFGKDDMVIPDSKAKIVADTEAL
TTEYEQQYNDGLITQGEKYNKVVDAWGKATDKITEEMMARIKAVEFDPVTGRQKQMNSVY
MMSHSGARGSVNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISEVDCGAEIGLTMQPIVDAGQIVAPIGQRVLGRT
ALDPIINPATGDVIVEAGRMIEEKDVEIIEKAGIQSIRIRSALTCETRNGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSYLEASYEGTVKLRNRN
VVRNSDGNLVVMGRNMAVLIVDATGKERAVHRVTYGSRLFIDEGDAVKRGQRIAEWDPYT
RPILTEVEGYVEFEDLVDGLSVSETADESTGITKRVIIDWRSTPRGADLKPAMIIKDKSG
KIAKLSKGGEARFLLSVETILSFEPGAHVNAGDVIARLPMESAKTKDITGGLPRVAELFE
ARRPKDHAVIAEIDGTVRFGRDYKNKRRIIIEPNDDTIEPVEYLIPKGKPFHLQDGDVIE
KGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIE
ITESGDTGYITGDHVDRIELDEVNDRLIEEGKKPGSGNPVLLGITKASLQTPSFISAASF
QETTRVLTEAAVAGKMDMLQGLKENVIVGRLIPAGTGGMTNQIRRIATARDELIIDERRK
STGSAAANAMLTDMTNNAAE
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatcctcaggctccggcacagacgttcgattcc
atcagaatctcgattgccagccctgagaagattctgtcctggtcatacggcgagatcaag
aagccggagacgatcaactatcgtacgttcaagcctgaacgcgatggtctcttctgcgcg
cgtatctttggcccgatcaaggattatgaatgcttgtgcggcaagtacaagcgtatgaaa
tacaagggcatcatctgcgaaaagtgcggcgtggaagtcacgttgtcgcgcgttcgccgt
gagcgcatgggccatatcgaactggccgcaccggttgcacatatctggttcctgaagtcg
ctgccaagccgtatcggcacgctgctggacatgacgctcaaggatattgagcgcgtcctg
tacttcgagaactacattgttaccgaaccgggtctgacttcccttaaggagcatcagctt
ctgtcggaagaagaatacatgattgccgtcgatgagttcggcgaagatcagttcacagcc
cttatcggcgcagaagctattttcgagcttctggcttcgatggaactcgaaaagatcgca
gcggatctgcgcgttgatctggctgaaacgacttcagaactgaagacgaagaagctgatg
aagcgtctcaagatcgttgagaacttccttgagtccggtaatcgtcctgagtggatgatc
atgaagatcgttccggttatcccaccggatctgcgtcctctggttccactggatggcggt
cgttttgcgacttcggatctgaacgatctgtatcgtcgtgtgattaaccgtaacaaccgt
ctgaagcgtttgatcgaactgcgcgcaccgggcatcattatccgtaacgaaaagcgcatg
ctgcaggaagctgttgatgcgttgttcgacaacggtcgtcgtggccgcgttatcacgggt
gctaacaagcgtccgctgaagtcgctctccgacatgctcaagggtaagcagggtcgtttc
cgtcagaaccttcttggtaagcgcgtcgactattcaggtcgctcggttatcgtgacaggt
cctgagctgaaattgcaccagtgcggtctgcctaagaagatggcgctcgaactcttcaag
ccattcatctacgctcgtcttgacgccaagggttattcctcgaccgtcaagcaggcgaag
aagctggttgaaaaggaacgtccggaagtttgggatatcctcgacgaagtcatccgtgag
catccggttcttctgaaccgtgcgcctacgctgcaccgtcttggtattcaggcattcgaa
cccacgctgatcgaaggcaaggccattcagctgcatccgctcgtctgtacagcgttcaac
gctgacttcgacggtgaccagatggctgttcacgttccgctgtcgcttgaagctcagctt
gaagcacgcgtgctgatgatgtcgaccaacaacatcctgcatcctgcaaacggcgcaccg
atcatcgttccttcgcaggacatggttctcggcctctattatctgtcgatcgtggcagag
aaagaacccggcgaaggtatgatgtttgccgatatgggcgaacttcagcatgcgcttgag
aacaaggttgtcacgctgcacaccaagatcaaaggccgtttcaagacggttgatgcggaa
ggcaatgtcgtttccaaggtttacgacaccacgcctggccgtttgatcactggcgagctt
ctgccgaagcacgtcaatgtgccgttcgacatctgtaatcaggagatgaccaagaagaac
atctccaagatgatcgaccacgtctaccgccattgcggtcagaaagagacggttatcttc
tgcgatcgcatcatgcagctcggctttgcccatgcatgtcgcgccggtatttcgttcggt
aaggatgacatggtcattcctgactcgaaggcaaagatcgttgcagataccgaagcactg
acgaccgaatacgaacagcagtacaatgacggcttgatcactcagggcgaaaagtacaac
aaggtcgttgatgcctggggtaaggcgactgacaagatcaccgaagagatgatggcccgt
attaaggctgttgaattcgatccggtgaccggacgtcagaagcagatgaactcggtctac
atgatgtcgcattcgggtgcccgtggttcggtcaaccagatgcgtcagcttggcggtatg
cgtggtcttatggccaagccgtcgggtgaaatcatcgaaacaccgatcatctcgaacttc
aaggaaggcttgaccgttaacgagtacttcaactcgacacacggtgcccgtaagggtctt
gccgataccgctttgaagaccgctaactcgggatacctgacacgtcgtctcgttgacgtt
gcacaggatgcgattatttcggaagtcgattgtggcgccgaaatcggtctcaccatgcag
ccgatcgtcgatgccggtcagatcgttgctccaatcggacagcgcgttctgggccgtacg
gcacttgatccgatcatcaatccagcaactggcgatgttatcgtcgaagctggccgcatg
atcgaggaaaaggacgtcgaaatcatcgagaaggctggtatccagtccatccgtattcgc
tcggcactgacctgtgaaacccgcaacggcgtttgcgccaagtgctatggtcgtgacctt
gcacgcggtactccggtcaaccagggtgaagctgttggcgttatcgccgcacagtcgatc
ggggagcctggcactcagctgaccatgcgtaccttccacttgggtggtactgctcaggtt
gttgactcgtcgtacctcgaagcttcgtatgaaggcaccgtcaagctgcgtaaccgtaac
gtggttcgcaactccgatggtaacctcgtggtcatgggccgtaacatggcggttctgatc
gtcgatgctaccggcaaggaacgtgccgttcaccgtgtaacctacggttcgcgtctgttc
attgacgaaggtgatgcagtcaagcgcggtcagcgtattgctgaatgggatccatacacc
cgtccaatccttacggaagtggaaggctacgtcgagttcgaagatctcgtcgacggtctt
tcggtttcggaaacggcggacgagtcgaccggtatcacgaagcgcgtcatcatcgattgg
cgttcgaccccacgtggtgcggacctcaagcctgcgatgatcatcaaggacaagagcggc
aagatcgcaaagctgtcgaagggtggcgaagctcgcttcttgctttcggtagaaacgatc
ctttcgttcgaaccgggtgctcacgttaacgctggtgacgtcatcgctcgtctgccgatg
gaaagcgcgaagaccaaggatattaccggtggtctgcctcgcgttgcggaactgttcgaa
gctcgtcgtccgaaggaccatgccgtcatcgcagagatcgatggtaccgttcgtttcggt
cgcgattacaagaacaagcgccgcatcatcatcgagccaaacgatgacacgatcgagcct
gttgagtatctgattcctaagggcaagccgttccatcttcaggacggtgacgttatcgaa
aagggtgaatacatcctcgacggtaatccagcgccgcacgacattctggccattaagggc
gtagaagctcttgcttcttacctcgttaatgaaatccaggaggtctatcgtcttcagggc
gttctgatcaacgacaagcacatcgaagtgattgttcgtcagatgctccagaagatcgag
atcacggaatcgggcgataccggttacatcaccggtgatcatgtcgatcgcatcgaactc
gatgaggtcaatgatcgtctgattgaggaaggcaagaagccaggttcgggtaatccggtt
ctgcttggtattaccaaggcttcgctgcagactccttcgttcatctcggctgcgtcgttc
caggaaaccactcgcgtgcttaccgaagcggctgttgccggcaagatggacatgctgcag
ggtctcaaggaaaacgttatcgtcggtcgtctcatcccggccggtactggtggcatgacc
aaccagatccgtcgtattgctacggctcgcgacgaactgatcatcgacgagcgccgcaag
tcgaccggttcggcagcagccaatgcgatgctgacagacatgaccaacaacgcagccgaa
taa
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