Ochrobactrum quorumnocens: CES85_1696
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Entry
CES85_1696 CDS
T05040
Symbol
sigA
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
och
Ochrobactrum quorumnocens
Pathway
och02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
och00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CES85_1696 (sigA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
och03021
]
CES85_1696 (sigA)
Transcription machinery [BR:
och03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CES85_1696 (sigA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Relaxase_C
EFhand_Ca_insen
Imm3
DUF4351
Motif
Other DBs
NCBI-ProteinID:
ASV87471
UniProt:
A0A248UM56
LinkDB
All DBs
Position
1:complement(1590437..1592455)
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AA seq
672 aa
AA seq
DB search
MATKAKENEEAEVEREGATDGPLLDLSDDAVKKMIKLAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVVEDDEQEADRDDSNDDDTDEGGDLVETTGTAVAATTTKKEPTD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWREQLN
ESNILLREIIDLETTYAGPEAKQAPIVERVEEEKPRDDKSVRRSRDDDDITNVGGDMPAE
EEEEDEDEANLSLAAMEAELRPQVMETLDLIADTYRKLRKLQDQQVESRLAATADLSSSQ
ERRYKELKDQLIKAVKSLSLNQNRIEQLVEQLYDINKRLVQNEGKLLRLAESFGVRREEF
LKEYQGHELDPKWVDRVSTLSARGWKEFAAKEERAIDRLRSEIQMLATETAISIGEFRRI
VNQVQKGEREATIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPE
ELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLR
DTTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP
SRSRKLRSFLDS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaggctaaggaaaacgaagaagccgaagtcgagcgcgaaggtgcgaccgac
gggccgcttctcgacctttctgacgatgctgtcaagaagatgatcaagcttgcgaagaag
cgcggctacgtcactatggacgagctgaatgccgtgctgccttccgaagaagtgacatct
gagcagatcgaagacaccatgtccatgctatcggacatgggtatcaacgtggttgaagac
gacgagcaggaagctgatcgcgacgacagcaacgatgatgatacggacgaaggcggcgat
ctggtcgagacgaccggcactgctgttgccgctaccacgactaagaaagaaccgactgat
cgtacggatgatcctgtgcgcatgtatttgcgtgaaatgggttccgtcgagcttctgtcg
cgcgagggcgaaatcgccatcgcaaagcgtatcgaagccggtcgcgaaacgatgattgcc
gggctttgtgaaagcccgctgacctttcaggccattattatctggcgtgaacagctgaat
gaatccaacattctgctgcgtgaaatcattgatctcgaaaccacttatgctggcccagaa
gccaagcaggcaccaattgttgaacgtgtggaagaagaaaagccacgcgacgacaagtct
gtgcgccgttcgcgtgacgacgacgacattaccaatgtcggcggcgatatgcctgcggaa
gaagaagaggaagacgaggacgaagccaacctgtcgttggcggctatggaagccgagctg
cgcccgcaggttatggaaacgcttgatcttatcgctgacacgtaccgcaagctgcgtaag
ttgcaggatcagcaggttgaaagccgtctggctgcaactgccgatctgtcttcgagccag
gagcgccgctacaaggaactgaaagatcagctgatcaaggctgtgaagtcgctgtcgctg
aaccagaaccgtattgagcagctggttgagcagctttatgacatcaacaagcgtctcgtc
cagaacgaaggcaagctgttgcgtcttgctgaatccttcggcgtccgtcgcgaagagttc
ctgaaggaatatcagggccacgaactggatccgaaatgggtcgaccgcgtcagcactctg
tcggcgcgtggctggaaggaatttgcagccaaggaagaacgtgcgattgatcgtctgcgt
tcggaaattcagatgctggccactgaaactgcgatttcgatcggcgaattccgccgtatc
gtcaatcaggttcagaagggcgaacgcgaagcaaccatcgccaagaaggaaatggtagaa
gccaaccttcgtctcgttatctcgattgccaagaagtacaccaatcgtggccttcagttc
ctcgatcttattcaggaaggcaatatcggcctgatgaaggcggttgataagtttgaatat
cgtcgtggttacaagttctcgacctatgcgacatggtggattcgtcaggcaatcacacgt
tcgattgctgaccaggcccgtaccatccgtattccggtgcacatgatcgaaacgatcaac
aagatcgttcgtacatcacgccagatgctgcatgaaatcggtcgtgagcctacgccggaa
gaactggcagaaaagctggccatgccgcttgaaaaagtgcgcaaggttttgaagattgcg
aaagagccgatctcgctcgaaacgccagtgggtgatgaagaagattcacatctcggcgat
ttcatcgaagacaagaacgcgcttcttccaatcgatgcagccattcaggcaaaccttcgc
gatacgacgacccgtgttctggcatcgcttacgccgcgtgaagaacgcgtactgcgcatg
cgtttcggtatcggcatgaacactgaccacacacttgaagaagtcggtcagcagttctcg
gtaacacgcgaacgtattcgtcagattgaagcgaaggcgctgcgcaagctcaagcatccg
agccgttcgcgcaagctgcgttcgttccttgatagctaa
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integrated database retrieval system
