Ochrobactrum quorumnocens: CES85_3257
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Entry
CES85_3257 CDS
T05040
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
och
Ochrobactrum quorumnocens
Pathway
och03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
och00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CES85_3257 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
och03019
]
CES85_3257 (recQ)
03400 DNA repair and recombination proteins [BR:
och03400
]
CES85_3257 (recQ)
Enzymes [BR:
och01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CES85_3257 (recQ)
Messenger RNA biogenesis [BR:
och03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CES85_3257 (recQ)
DNA repair and recombination proteins [BR:
och03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CES85_3257 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
ASV88352
UniProt:
A0A248UP22
LinkDB
All DBs
Position
unnamed1:486312..488114
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AA seq
600 aa
AA seq
DB search
MMTDPPHILKTIYGYDAFRGRQAEIVSHAIAGNNAFVLMPTGGGKSLCYQIPALARPGMG
IVVSPLLALMADQVSALRQAGVKAAALNSDLAGDDRLALWRDIHAGALDLLYVAPETLLR
PDTLQRLSDVSLSLIAIDEAHCLSQWGHDFRPSYRQLDVLTTQFPDTPRMALTATADEPT
RAEILSHLQIDKRDAFIAGFDRPNIRYTIMEKDNPRAQLKRFLQDHQGESGIVYCLSKRK
TEETAEWLRSLGYDALSYHGGMEKSAREANQARFQHDEAVIMVATIAFGMGIDKPDVRFV
AHIDLPGSIEAYYQETGRAGRDGLPAEAMMLYGYDDIVLRSRFIEESDAPDQRKRMERQK
LDTLLGLAETANCRRQVLLSYFGDRCEPCGNCDTCAEPPTLFDGTIAAQKILSCIHRTGQ
RFGQAYIVDVLLGVDDERISRFGHDQISTFGIGREHDNHTWRGIIRQLVAQWLIDVDFAG
HGGLLISETGRQFLRAKQTLMLRVPPKSKPSRGAVSRGKSVTSALSERDEALFQALREKR
LEIARTQNVPPYVIFHDRTLIELAIARPASRAQMADVPGVGETKLERYGPAFLAVINAHG
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccgacccgccccatattctcaaaaccatctatggatacgatgctttccgtggg
cggcaagcagagatcgtgtcgcatgcgatagcaggcaataatgcattcgtcctcatgcca
acgggcggcggcaaatcgctatgctatcagattcccgcccttgcccggccgggcatgggg
atcgtggtttcaccgcttctggcgctgatggccgatcaggtctccgcactccggcaggca
ggtgtgaaggctgcggcgctcaattccgaccttgctggcgatgacaggctggccttgtgg
cgtgatatccatgctggggcgcttgatctgctctatgtcgcgcctgaaaccctgctcaga
ccggatacattgcaacgtctgagcgacgtgtctctctcgctgatcgctatcgacgaagca
cattgtctgtcgcaatgggggcatgatttcagaccatcctatcggcagctcgatgtgttg
acgacgcagtttcccgacacgccacgcatggcattgaccgcaaccgccgacgagccgaca
cgtgcggaaatcctgtcgcatctgcagattgacaagcgcgatgccttcattgccggtttc
gaccgtcccaatattcgctacacgatcatggagaaggacaatccccgcgcgcaattaaaa
cgttttctgcaggatcatcagggcgaaagcggcatcgtttactgtctttcgaaacggaag
acggaagaaacggccgaatggttgcgcagcctgggctacgatgccctctcctatcacggc
ggcatggaaaagtccgcgcgcgaggcgaaccaggcacgattccaacatgacgaggcggtc
atcatggtggcgacgattgcctttgggatgggcatagacaagccggatgtacgcttcgtc
gcccatatcgatctgccgggaagcatcgaagcctattatcaggagacagggcgtgcaggg
cgcgacggactaccagccgaggcgatgatgctctacggttatgacgatatcgtcctgcgc
agccgcttcatcgaggaatcagacgcccccgatcagcgcaagcggatggagcggcagaaa
ctcgacacgcttcttgggctcgccgaaacggcgaactgtcgcagacaggtgctactgtct
tatttcggtgatcgatgcgaaccatgcggcaattgcgatacctgcgccgaaccaccaacc
ctcttcgatgggacaatagccgcgcagaaaatattgtcctgcattcacagaaccgggcag
cggttcgggcaagcctatattgtcgatgtccttcttggcgtcgatgatgagcgtatcagc
cgctttggccacgaccagatttcgactttcggaatcggccgcgagcatgacaatcacacc
tggcgtgggatcatacggcagttggtcgcgcagtggctgatcgatgtcgactttgccgga
catggtggtctattgatctcggagacaggcaggcagtttttgcgcgcaaagcagacgctg
atgttgcgtgtcccgccgaaatcgaagccatcgcgtggggctgtttcgcgtggaaaatcg
gtaacatccgccctttcggagcgtgatgaggcgctgtttcaggcgctgcgcgagaagcgg
ttagaaatcgcgcgcacgcaaaatgtgccaccttatgtgatcttccacgatcgcacactg
atcgaactggccattgccaggccagcctcacgcgcccaaatggccgacgtgcccggtgtc
ggcgaaacaaagctcgaacgctacggcccggcctttttggccgtcatcaatgcacacggg
taa
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