Ochrobactrum quorumnocens: CES85_3914
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Entry
CES85_3914 CDS
T05040
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
och
Ochrobactrum quorumnocens
Brite
KEGG Orthology (KO) [BR:
och00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
och03032
]
CES85_3914 (topA)
03400 DNA repair and recombination proteins [BR:
och03400
]
CES85_3914 (topA)
Enzymes [BR:
och01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CES85_3914 (topA)
DNA replication proteins [BR:
och03032
]
Prokaryotic type
DNA Topoisomerases
CES85_3914 (topA)
DNA repair and recombination proteins [BR:
och03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CES85_3914 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Peptidase_M35
Motif
Other DBs
NCBI-ProteinID:
ASV83138
UniProt:
A0A248U8W2
LinkDB
All DBs
Position
2:complement(96420..99062)
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AA seq
880 aa
AA seq
DB search
MNVVVVESPAKAKTINKYLGSNYKVLASFGHVRDLPAKDGSVRPDEDFAMSWEVDSNSAK
RLADIVKALKDADGLFLATDPDREGEAISWHVLEVLNQKKALKGKTVKRVAFNAITKKAV
LDAIANPRDIDEPLVDAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ESEIERFIREEYWNIAALLKTPRNDNFTARLTAVDGKRLGKLDIKNEEQASAIRTMLEGA
SFKAVSVEAKPTKRNPGPPFTTSTLQQAASGQLGFSASRTMQVAQRLYEGVDIGGETTGL
ITYMRTDGVQMAPEAITAARDAIGKSFGPNYVPEKPRYYASKAKNAQEAHEAIRPTDFMR
HPKEVRRYLDEDQARLYELIWKRAIASQMQAADIERTTADIEALNGSKSAMLRANGSVTK
FDGFLAAYTDHREEEDEDEDSAKLPEIRSGEAIAREKIDATQHSTEPPPRYSEASLIKKM
EELGIGRPSTYAATLATLRDREYITIDKRKLTPDPKGRLVTSFLESFFKRYVEYDFTADL
EEKLDLISDGKLSWKDVLRDFWRDFSGSVDDIKELRVTNVLDALNEELAPLAFPDRGDGS
DPRTCPTCGTGQLSLKLGKYGAFVGCSNYPECKFTRQLGGEGSGDAAASDEPKSLGKDPF
TGEEITARTGRFGPYIQRGEGKEAKRASLPKGWSVDTLDHEKAIALLSLPRDVGQHPETG
KMISAGIGRYGPYVSHDGTFANLENADEVFSVGLNRAVAVLADKQSKGAGRGRSTPAALA
TLGDHPDGGSITVRDGRYGPYVNWGKVNATLPKGKDPASVTLEEALALITEKAGSTKPKK
APARKAASKSATAEKKTTTKKTAAKKPAAKSKSKAKAAEE
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgaacgttgtcgttgtcgaatcgcctgccaaggccaaaactatcaacaaatatctcggc
tcgaactataaggttctggcttcgtttggtcatgtgcgagatctgccagctaaggatggc
tccgtccgcccggacgaagattttgccatgtcctgggaagtggacagcaattccgccaag
cgtctggcagatattgtcaaagcgttgaaggacgccgatggcctgtttctggcaactgac
cctgatcgcgaaggggaagccatttcatggcatgtgctggaagttctcaatcaaaagaaa
gctctcaagggcaaaacggtaaagcgcgttgcattcaacgcaatcaccaagaaggctgtc
cttgatgctatcgccaatccgcgtgacatcgacgagcctctggttgacgcctatctggct
cgccgtgctctcgattatctggtcggctttaccttgtcgccggtcctgtggcgcaaattg
ccaggtgctcgttcggctggccgcgttcagtcggtagcccttcgtctggtctgtgatcgc
gagtccgagatcgagcgcttcattcgtgaagaatactggaacattgccgcgcttttaaaa
acgccacgcaatgataacttcacggcacgcctaaccgctgtcgatggtaagcgtcttggc
aagctcgatatcaagaatgaagagcaggcaagcgcgatccgaaccatgcttgaaggcgca
agcttcaaggcagtctcggtcgaggcaaagccaaccaagcgcaatcctgggcctccattc
accacatcgaccttgcaacaggcagcgtccggtcagctcggcttctctgcttcgcgcacc
atgcaggtggcgcagcgcctttatgaaggcgtagacattggcggcgaaaccaccggtctc
atcacctatatgcgaactgacggtgtgcaaatggcgcccgaagcgatcactgcagcgcgt
gatgcgatcggcaaaagcttcggcccgaactacgtaccggaaaagccacgctattatgcc
agcaaggcgaagaacgcacaggaagcgcacgaagcaatccgcccgactgacttcatgcgc
caccccaaagaagtgcgccgctatctagatgaagatcaggcgcgtctttacgagctgatc
tggaagcgtgctatcgcaagccagatgcaggctgccgacattgaacgcacgacagcagac
atcgaggccttgaacggctcgaagtcggcaatgctgcgcgccaatggttcggtcaccaag
ttcgacggattcctagctgcctatacagatcatcgcgaggaagaggacgaggatgaagac
agcgcaaagctgccggaaatccgctctggtgaagcgattgcgcgtgaaaagatcgacgcc
acgcagcactccacagaaccaccgccgcgctattccgaagcctctctcatcaagaaaatg
gaggagctcggcattggccgtccttcgacctatgcggcgacactcgccaccttgcgcgat
cgggaatatattaccatcgacaagcgcaagctgacgccagacccgaaaggccgtctggta
acatcgttccttgaaagcttcttcaagcgctatgtcgaatatgatttcacggccgatctg
gaagaaaagctcgatctgatttccgacggcaagctgtcgtggaaagacgtgctgcgcgat
ttctggcgtgatttctccggctctgtcgacgacatcaaggaactgcgtgttaccaatgtt
ctcgacgcgctcaacgaagaactggcaccgcttgccttcccggatcgcggcgatggcagc
gatccacgcacctgcccaacttgtggaacaggtcaactctcgctgaagctcggcaaatat
ggcgcattcgtcggctgctccaattatcccgaatgcaagttcactcgtcagctcggtggt
gagggaagtggcgatgctgcggcttctgatgaaccaaagtcactcggcaaagatcctttc
accggcgaagaaatcactgcccgcaccggacgtttcggaccttatatccagcgcggcgaa
ggcaaggaagccaagcgcgcgagtctgccgaaaggctggtcggtcgatacgcttgatcat
gaaaaggcgattgcccttctgtcgctgccacgcgatgtcggacagcaccctgaaaccggc
aaaatgatttcagccggcattggacgctatggtccttatgtcagccatgacggtacgttc
gcgaacctcgaaaatgctgacgaagttttctcggtcggccttaaccgtgcggttgctgtg
cttgccgacaaacaatccaagggtgctggtcgcgggcgttccacacctgcagcgcttgca
acgcttggcgatcatcctgatggtggttcaatcaccgtccgtgatggccgctatggtccg
tatgtcaactggggcaaagtcaatgctaccctgccaaagggcaaagacccggcaagtgtg
acgcttgaagaagcgctcgccctgattacggaaaaagctggcagcacgaagcccaaaaag
gctccggcacgtaaagccgccagcaagtcagcgactgctgaaaagaagacaacaacgaaa
aagaccgccgcaaagaagcccgctgctaaatcaaaaagcaaggcgaaagcggcagaggag
taa
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