Oceanihabitans sp. IOP_32: FEZ18_01200
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Entry
FEZ18_01200 CDS
T06249
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
oci
Oceanihabitans sp. IOP_32
Brite
KEGG Orthology (KO) [BR:
oci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oci03400
]
FEZ18_01200
DNA repair and recombination proteins [BR:
oci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FEZ18_01200
Archaeal homologous recombinant proteins
FEZ18_01200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QFZ53520
UniProt:
A0A5Q0JRT4
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Position
complement(299429..303082)
Genome browser
AA seq
1217 aa
AA seq
DB search
MKILKIELQNINSLKSESTIVIDFESEAFADVGLFAITGPTGAGKTTVLDAITIALYHSV
PRFSGTKGSLLDVVSHGANDAFSRVTFENDTVIYEAFWGIRVADKSGKRYKNPKEEVSLK
NLTSGEILATQKRQLITEMVRVTQLDYQQFLRSVMLAQGEFAAFLTAKGPEKGRLLEQIT
GEDIYKKIGQAILDRKAYEEKQLEQLEAKINADDVLTEDRKIALSQKDKILDAQISQVEK
DLKSAQTIVDWYGKFHKINEEADKLDKDAQNILRFIESHKRELELLDLNEKAEPFKDAIQ
HYNRIDKAFETKRNVLKTIENELTQLKPKIENLERITKKQVLELELADQEFAKWLPKFDV
ITNLDGALKNEAENRDNLKKKLDALALQIEGLINEEKDLVKRLFETESKIKSETAFINQN
SFLKDVALEISNWTTRLTTLKGHKDALNKDLIFVDEKNKELEKTTAHLLTNDDLLIKKTA
EIEKTEKELAKVAAHLSKNNITDILAKKEKLTLTESHWKQFSNLSQQTIKAQKEHDRLVL
QQKTYAIDLESVTKEIQTINKHIEAQEKSVADADKILNLEKSISKYENDRHNLIKGEPCG
LCGSKDHPFTKHLEVAGVSKSELELNNRKEILNKFNFFKNELDKRQVKINTTLETTKQHI
QTMSEELKALKLTANQLNIDCELTDVSKIETELNGLTEQIKSLNETLKTAQQLQTDKNTL
SEQIKAQNEAVNMIKTTRAKLEENIKNTKAEIKLKRESINSLTQICTDLEHDLKIKLSKF
NYQLPSLEQTHIFIQNIEEAIGNFNKKQKNLDVLNSDLKVINTNLINNKKQLEAHYKTQK
DDFKNISDSAAKSETLKTQRHRILPMHITVESKRKALEVVKYEINKKVELSKKDLQILRD
SINEKETLRRNTIKEQKELLDELHTLKSALDTQIKNSDFETKQAVEKALLSHEDKVKYTR
NKDRIRENQVKLKTLKSANKKAKEDLNTLKTFDVSEAESKQNLEDLKTENKTLLTEKGKI
IETFRKDKEIRDRNRELYKKIEAQVNVCKVWRSLFKIIGNSKDAFNVYVQRLTLKNLLDL
ANLHLYQLNKRYSLQLEESYKPKEELNFNLIDHYQTDQVRLIDTSSGGEKFIISLALALG
LSDLASKNVKIDSLFIDEGFGTLDSNTLETVISTLETLQSQGKMIGIISHVEHLKERIPT
QIQITKKSNGVSVLDIL
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttaaaaatagaattacaaaatataaattcattaaaatctgaatctactatt
gttatagattttgaaagtgaagcctttgcagatgtgggtttgtttgccataacagggcct
actggtgcaggtaaaactactgttttagatgccattactatagccttatatcatagtgtg
ccacgctttagtggtacaaaaggtagcttacttgatgtggttagtcatggtgcaaacgat
gcttttagccgcgtaaccttcgagaacgacactgttatttatgaggccttttgggggatt
agagttgccgataaatcagggaaaaggtataaaaacccaaaagaagaagtaagcttaaaa
aatttaacatcaggcgagattttagccactcaaaaacggcaattaattaccgagatggtg
cgcgttacgcaattagactatcagcagtttttaagatcggtaatgctagctcaaggggaa
tttgcggcgtttttaaccgccaaaggcccagaaaaggggcgtttgttggagcaaattaca
ggcgaagacatttataaaaaaattggacaagctattctcgatagaaaagcatacgaagaa
aagcaattagagcaattagaggctaaaattaatgccgatgatgttttaacagaagatcgc
aaaattgcactcagtcaaaaagacaaaatactagatgctcagataagtcaggttgaaaag
gacttgaaatccgctcagactatagtagattggtatggtaagttccataaaattaacgaa
gaagcagataaactggataaagatgctcaaaatatcctgcgttttatagaaagccataaa
cgagaattagagttattggatttaaacgaaaaagcagaaccctttaaagatgctattcag
cattacaacagaatagacaaagctttcgagaccaagagaaacgttttaaaaaccatagaa
aacgaattaacgcaactcaaaccaaaaattgaaaatttagagcgcataaccaaaaaacaa
gtgcttgagctggagttggcagatcaagaatttgctaagtggttgcctaaatttgatgtc
attaccaacttagatggtgcattaaaaaacgaagccgaaaaccgcgataatttaaagaaa
aagttagatgctttagccttgcaaatcgaagggttaataaatgaagagaaggatttagtt
aagcgtttatttgaaacggaatcaaagattaaaagtgaaacggcatttattaatcagaat
tcatttttgaaagatgtagccttagagatatcaaactggacaacccgtttaaccacatta
aaaggacataaggatgcattaaacaaagatttaatatttgttgatgagaaaaataaagag
ctagaaaaaacaactgcgcatttattgaccaacgacgaccttctcataaaaaaaacagca
gaaattgaaaaaacagaaaaggaactcgctaaagtcgcggctcatttatccaaaaacaat
atcaccgatatattggccaaaaaagaaaaattgaccttaacagaatcgcattggaaacag
tttagtaatctttctcaacaaaccataaaagctcaaaaggaacatgatcgtttagtgctt
cagcagaaaacgtacgctatagatttggaaagtgttacaaaagaaattcaaacgataaac
aaacacatagaggcacaagaaaaatcggttgcagatgccgataaaattttaaatctagaa
aaaagtatttctaaatacgaaaacgatcggcataatttaataaaaggggaaccttgtggt
ttgtgcggttctaaagatcatccttttactaagcatttagaggttgcaggggtctcaaaa
tctgagttagagcttaataaccgaaaagaaattttaaacaaatttaatttttttaaaaat
gaattagataaaagacaggtaaaaattaacacaacccttgagacgacaaagcaacacatc
caaacgatgtcagaagaattgaaggctcttaaattaactgcaaatcagttaaatattgat
tgtgaattaactgatgtttcaaaaatagaaactgaactaaatgggctaaccgaacaaatt
aagtccttaaacgaaactttaaaaacggcacaacaattacaaacggataagaatacacta
tcagaacaaattaaagcgcaaaacgaagccgttaatatgattaaaacaactcgtgccaaa
ctagaggaaaacattaaaaatactaaagctgaaattaagcttaagcgcgaatccattaac
agtttaactcaaatttgtaccgatttagagcacgatttaaaaataaaattatccaaattt
aattaccaattaccatccttagaacaaacccatatatttattcaaaatattgaggaggct
attggtaattttaataaaaagcaaaagaacttagatgttttaaattcagacctaaaagtc
attaataccaatttaattaacaataaaaaacaacttgaagcgcattataaaactcaaaaa
gatgattttaaaaacataagtgattctgcggcgaaatctgaaacattaaaaacccaacga
caccgcattttgccaatgcatattactgtagaaagtaaaagaaaggctttggaggttgtg
aaatatgaaatcaataaaaaagttgaactgagcaagaaagacctgcaaatactgcgggat
agtattaatgaaaaagaaaccttaagacgtaataccattaaagagcaaaaggaattgcta
gatgaattgcacactctaaaatcagccttagatacacagataaaaaatagtgattttgaa
accaaacaagctgtagaaaaagccttattatctcatgaagacaaagtaaaatacactcga
aataaggatcgaataagagaaaatcaggtcaaactaaaaacattaaaatcggccaataaa
aaggcaaaggaagatttaaatacattgaagacttttgatgtttcagaagctgaaagcaaa
caaaatttagaagatttaaaaacagaaaacaaaaccctgttaaccgaaaaaggaaagatt
atcgagacctttagaaaggataaagagattagagatagaaatagggaactttacaaaaaa
attgaagcacaggtaaacgtatgtaaggtatggagatcgctttttaaaattattggcaac
tcaaaagacgcctttaatgtttatgtacagcgtttaaccttaaaaaacttactagatctt
gctaacttgcatctataccagttaaataagcggtattcattacaacttgaagaaagctat
aagccaaaggaggaacttaattttaatttaattgatcattaccaaaccgatcaagttcga
ttaattgatacttcaagcggaggcgaaaagtttattattagtttggcattggccttaggg
ttatccgatttagcgagtaaaaacgttaaaatcgattctttatttattgacgagggcttc
gggaccttagacagcaatactttagaaacggttatttccacgttagaaaccctacaatct
caaggaaaaatgattggcatcatatcgcatgtcgagcacctaaaagaacgtattcctact
caaattcagattacaaaaaagagtaatggggtaagtgtgttggatattttatag
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