Oceanihabitans sp. IOP_32: FEZ18_08880
Help
Entry
FEZ18_08880 CDS
T06249
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
oci
Oceanihabitans sp. IOP_32
Pathway
oci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FEZ18_08880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oci03019
]
FEZ18_08880
03009 Ribosome biogenesis [BR:
oci03009
]
FEZ18_08880
Enzymes [BR:
oci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FEZ18_08880
Messenger RNA biogenesis [BR:
oci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FEZ18_08880
Ribosome biogenesis [BR:
oci03009
]
Prokaryotic type
rRNA helicases
FEZ18_08880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QFZ54906
UniProt:
A0A5Q0JW08
LinkDB
All DBs
Position
complement(2121333..2123135)
Genome browser
AA seq
600 aa
AA seq
DB search
MSTFQELGLNDHLLQAITDLGFTKPSEVQEKAIPILLESETDLVALAQTGTGKTAAFGFP
MLEKIDVDSRTTQGLILSPTRELCLQITNEMKNYGKYCKGLNVVAIYGGSSITDQAREVK
RGAQIIVATPGRMKDMISRRLVDISKIEYAVLDEADEMLNMGFKEDITDILSHTPEDKST
WLFSATMPKEVATISKKFMKNPQEITVGNKNESTSQVTHEYYLVNARDRYQALKRLSDAN
PDIFSVVFCRTKRDTQKVAEQLIEDGYNAGALHGDLSQNQRDLVMKSFRNKQIQTLVATD
VAARGIDVDNITHVIHYQLPDEPEVYTHRSGRTGRAGRTGVSMAIVSKSEVRKIKSIERV
IKKKFEKKEIPDGADICEIQLMSLANKIHNTEINPEINKHLDSINELFADTDKDELIKKF
FSVEFTRFYNYYNKSKNLNIAESSFDRDGGRDFGGKSNSTRYFINVGAKDGFDWMKLKDF
LKEVLELGRDDVFKVEVKDSFSFFNTENELKDKVLAFFTDYKHDGRFVNVEVSENRGGGR
RRDFKRSGGKGNDRRSSGRRDDKRTNSGSRSDRRSGSSSYAKPRRSDSGSGPSVPRRSRR
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagaattaggtcttaacgaccatttattacaagccattacagattta
ggttttacgaaaccgagtgaagtacaagaaaaagccatcccaattttattagaatcggaa
accgatttagtagcattagcccaaacaggaaccggtaaaacagctgctttcggatttcca
atgctagagaaaatagatgtggatagtcgaaccacccaaggtttaattttaagtccgaca
cgcgaactttgtttacaaattaccaacgaaatgaaaaattacggtaaatactgtaaaggt
ttaaacgtcgtggccatttatggtggttctagcattacagaccaagcacgcgaggtaaaa
cgtggcgcccaaattattgtggcgactcctggccgtatgaaagacatgattagcagacgt
ttggttgatatcagcaaaattgaatatgcggtattagacgaggccgacgagatgttaaac
atgggctttaaagaagatattaccgatattttatcgcacacgccagaggacaaaagcaca
tggttattctctgcaacaatgccaaaagaagtggctacgatttctaaaaaattcatgaaa
aatcctcaggaaattactgttggaaataaaaatgaaagtactagccaagtgactcacgaa
tactatctggtgaatgctagagatagatatcaagcgttaaagcgcttatcggatgctaat
ccagatattttttctgtggtattttgtcgtaccaaacgtgacacccaaaaggtggcagaa
caacttattgaagacggttataatgctggcgcattgcatggtgatttaagccagaatcag
cgtgatttggtaatgaaatcgtttagaaacaaacaaattcaaaccctagtggcaaccgat
gttgcggcgcgtggtattgatgtcgataatattacacacgtaatacattaccaattgccc
gacgagcccgaagtctatactcaccgctcaggtagaacaggtcgtgccggaagaacgggt
gtctccatggcgatagtttctaaaagtgaagtgcgtaaaattaaaagtattgaacgcgta
ataaaaaagaaattcgagaaaaaagaaattccagatggcgcagatatttgtgaaatacaa
ctcatgtcgctcgctaataaaattcataatacagaaataaatcctgaaattaataaacac
ttagacagtattaacgaattatttgctgatacagacaaagacgagttaattaaaaaattc
ttttcagtagaatttacgcgcttttataattactataataaatctaaaaacttaaacata
gccgaaagctcttttgatagagatggtggtagagattttggtggaaaatctaattctaca
cgttactttataaacgtaggtgctaaagatggtttcgattggatgaagcttaaagatttc
ttaaaagaagttttagaactgggtagagacgatgtgtttaaagttgaagtaaaagatagc
ttctccttttttaatactgaaaatgaattaaaagataaggtacttgctttctttacagat
tataaacacgatggtcgttttgtaaatgtagaagtatctgaaaaccgtggaggcggaaga
cgacgcgattttaaacgcagcggcggaaaaggtaatgatcgacgcagtagcggaagacgt
gatgacaaacgaacaaactcaggaagccgaagcgacagacgcagtgggagctcatcttat
gctaaaccaagacgctcagactctggttctggaccctctgtaccacgacgttcaagacgc
taa
DBGET
integrated database retrieval system
