Oceanihabitans sp. IOP_32: FEZ18_09165
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Entry
FEZ18_09165 CDS
T06249
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
oci
Oceanihabitans sp. IOP_32
Brite
KEGG Orthology (KO) [BR:
oci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oci03032
]
FEZ18_09165 (topA)
03400 DNA repair and recombination proteins [BR:
oci03400
]
FEZ18_09165 (topA)
Enzymes [BR:
oci01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FEZ18_09165 (topA)
DNA replication proteins [BR:
oci03032
]
Prokaryotic type
DNA Topoisomerases
FEZ18_09165 (topA)
DNA repair and recombination proteins [BR:
oci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FEZ18_09165 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Poly_export
RP-C
Toprim_4
DnaB_2
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
QFZ54956
UniProt:
A0A5Q0JW47
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All DBs
Position
2202705..2205239
Genome browser
AA seq
844 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGKDFKVESSFGHISDLPSKELGVNVEGDFKPTYEVSKDK
KAVVKKLKDLAKKAEMVWLASDEDREGEAIAWHLAEALKLDKDKTKRIVFHEITKSAIDK
AIENPRGIDYDLVDAQQARRVLDRIVGYELSPVLWRKVKGGLSAGRVQSVSVRLIVERER
DIQNFKPVASYRIDAEFSNEEGKTFKAKLPKNFSSKTEAQNFLEQNLSAHFKVADLQKKP
AKKSPAPPFTTSTLQQEAARKLYFSVSKTMTMAQRLYEAGLITYMRTDSVNLSDEARKGA
EAEIKTAYGSKYSKPRNFKGKAKGAQEAHEAIRPTSFAIHSVDIDYDQARLYDLIWKRSI
ASQMSDAQLERTNVKISASTHKETFTANGEVITFDGFLKVYLEGTDDEDVEQEGMLPAMK
ASETLLNNYITATQRYTRPPARYTEASLVKKLEELGIGRPSTYAPTISTIQNRNYVEKGT
VEGEARNYSQLTLKAGEVKEKTLSEKVGSDKGKLVPTDIGMIVTDFLVNHFENILDYNFT
AKVEADFDDIAEGKEDWIKMMKSFYKDFHPQVEHVKENAERESGERILGEDPKTGKRVSV
RLGKFGPMVQIGTVDDEEKPQFASLGPDQQLNTITFEEAMDLFKLPKDLGTYEGEEVLVN
NGRFGPYVKFGETFVSLPKGTDPLNVELEDAIVLIKEKQKADAPIYMYKELPVQKGKGRF
GPFIKWNNMFINVNKKYDWDNLSEEDIVELIETKIQKEIDKVIHNWEDEGIRVEKARWGR
HNVIKGKIKVELAKTIDVSDMTLDEAKALIEAKTPKKKAAKKKPATKKTTTKKTTKKKTA
VKKK
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagtgattgttgagtcacctgctaaggcaaaaactatagaaaaattt
ctaggaaaagattttaaagtagaatctagttttgggcatatatccgatttaccttcaaag
gaattgggtgtaaatgtagaaggtgattttaaaccaacgtacgaagtctctaaagataaa
aaagcagtagtaaaaaagctaaaagatttagcgaaaaaagccgaaatggtatggctagct
agtgatgaggatcgcgagggtgaggctatagcatggcatttggccgaggcattaaaactc
gataaagataaaacaaaacgtattgtttttcatgaaattaccaagtcggctatcgataaa
gctatcgaaaacccgagaggtattgattacgatttagtcgatgcacaacaagcgcgtcga
gtattagatagaatagtaggttacgagttgtcgcctgtgctttggcgaaaggtaaaaggt
ggtttatcggcaggacgagtacagtcggtttctgtgcgattaattgtcgagcgagaaagg
gatattcaaaattttaagcctgttgcttcgtatcgcattgatgccgagttttcaaatgaa
gaaggtaagacatttaaagccaaattgcctaaaaacttttcatcgaaaacagaagctcaa
aactttttggagcaaaatctttcggctcattttaaagtagccgatcttcaaaaaaaacca
gctaaaaaatcgcctgcacccccatttacgacatcgaccttacaacaagaagcggcacgt
aaattatatttttcggtaagtaagaccatgaccatggcgcaacggctttacgaggctggt
ttaattacctatatgagaaccgatagtgttaatttatcagacgaagcacgaaaaggtgcc
gaggccgaaattaaaacggcttatggtagtaagtatagtaaaccacgaaattttaaaggc
aaagctaaaggtgcacaagaggcgcacgaggccattcgaccaacaagttttgctatccat
tctgtagatatcgattacgaccaagcgcgtttgtacgatttaatttggaaacgttctatc
gcttcgcaaatgagtgacgcccaattagagcgtaccaatgttaaaataagcgcttcaacc
cacaaagaaaccttcactgcgaatggagaggttatcactttcgatggctttttaaaagtg
tatttagaaggtaccgacgatgaagatgttgagcaagaaggtatgctgccagcgatgaaa
gccagcgaaaccttactcaataattacataaccgcaacgcagcgttatacacgtccgcct
gcaagatataccgaagcctctttagttaaaaaattagaagaattaggaattgggcgtccc
tcaacctacgcaccaaccatttcgaccatccagaatagaaattatgtagaaaaaggaact
gttgaaggagaagcacgaaactattcgcaattaacacttaaagcaggggaggtaaaggaa
aaaaccttatccgaaaaagtaggatcggataaaggtaaactcgtaccaacagatattggt
atgattgtaaccgattttttagtcaatcatttcgaaaacattttagattataactttact
gccaaagttgaggcagatttcgatgatatagccgaaggaaaagaggattggataaaaatg
atgaaatccttttataaagattttcatccgcaggtagaacatgttaaagaaaacgccgaa
agagagtctggagaacgcattttaggcgaagatcccaaaactggaaaacgcgtaagtgtg
cgtttgggtaagtttggtcctatggttcaaattggtactgtagacgacgaagagaaacca
caatttgctagtttaggaccagatcaacaattaaataccataacctttgaagaggctatg
gatttgtttaaactcccaaaagatttggggacttacgagggtgaagaggtgctggttaat
aatggacgctttgggccctatgtaaaatttggagaaaccttcgtctcgcttccaaaaggg
acagatcctttaaatgtagaattagaggatgctattgtgttaataaaggaaaagcaaaaa
gctgatgcgcccatatatatgtacaaagaattgccagtacaaaaaggtaaagggcgtttt
ggtcccttcattaaatggaacaatatgttcattaatgtgaataaaaaatacgattgggat
aatttgtcggaagaagatattgtggagttgattgagactaaaattcaaaaagaaatcgac
aaagttatccataattgggaagatgaaggcattcgggtagaaaaagcacgctggggaaga
cacaacgttataaaaggaaaaataaaagtggagttggcaaagacaattgatgtttccgat
atgaccttagatgaagccaaggcgcttattgaagccaaaaccccaaagaaaaaagcagcc
aaaaagaagccggctacaaaaaaaacaacgactaagaaaaccaccaaaaagaaaaccgca
gtaaaaaagaaataa
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