Oceanihabitans sp. IOP_32: FEZ18_11230
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Entry
FEZ18_11230 CDS
T06249
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oci
Oceanihabitans sp. IOP_32
Brite
KEGG Orthology (KO) [BR:
oci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oci03016
]
FEZ18_11230
Enzymes [BR:
oci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
FEZ18_11230
Transfer RNA biogenesis [BR:
oci03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
FEZ18_11230
Prokaryotic type
tRNA splicing ligases
FEZ18_11230
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QFZ55338
LinkDB
All DBs
Position
complement(2681172..2682332)
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AA seq
386 aa
AA seq
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MKTVITTERIPIKLWLEEDQIEAEALEQARNLANLPFAFKHIAIMPDTHVGYGMPIGAIL
ATKAVVVPNAVGVDIGCGMCSLRTNLTHIEKPELKKIMSEIRKTIPLGFNHHEMPQDESW
MPIKKGNLPIVEQEYESALYQVGTLGGGNHFIEIQKGSDGYIWIMIHSGSRNIGFTVANH
YNDIAKEKNKALNENVPKDLAFIPKDSEYFDLYWNEMIYCIHFALANRKLMMERTKQAFM
DIIPEVEFSDFINKPHNFAALEEHFGELVIVHRKGATRARKGEWGMIPGSQGTQSFLVKG
KGNAESFESCSHGAGRVMSRAQARRTLNLKEEISLLSDQGILHAIRNRSDLDEAPSSYKD
IDEVMANQTDLVEVQITLQPLAVIKA
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactgttattaccacagagcgcatacctataaaattatggttagaagaagatcaa
atagaagcagaagccttagaacaagcacgtaatctcgccaatttaccttttgcctttaag
catattgctataatgcccgacacccatgtaggttatggcatgccaattggcgctatacta
gctaccaaagcggttgttgttccaaatgcagttggggtagatattggctgcggaatgtgc
tcgttacgtaccaacttgacacatatagaaaaacctgagctaaaaaaaataatgtcggag
ataagaaagacaatcccacttggttttaatcaccatgaaatgccacaagatgaatcttgg
atgcctataaaaaaaggaaatttgcccatagtggaacaagaatatgaaagtgctctttat
caagttggcacattaggcggcggaaaccattttattgaaattcaaaaaggatcggatggc
tacatttggattatgatccattcgggatctagaaacataggctttaccgtagcaaatcat
tataacgatattgcaaaagaaaaaaacaaagctcttaatgaaaacgtacccaaagacttg
gcatttattcctaaagattccgagtatttcgatctttactggaatgagatgatctattgt
atccattttgcactggctaaccgaaaactaatgatggagcgaacaaaacaggcctttatg
gacattatacccgaggttgaattttccgatttcattaataaacctcacaattttgccgct
ttagaagagcattttggtgaattggttatcgtgcatcgcaaaggagccacacgcgcacgt
aaaggcgaatggggcatgattcctggttctcaaggtactcaatcgtttttagttaaagga
aaaggaaatgctgagtctttcgaatcttgttcgcatggcgcaggaagagttatgagcaga
gcccaggctcgtagaactttaaatcttaaagaagaaataagccttctatcagatcaaggc
atacttcacgccattcgcaaccgtagcgatttggatgaagctccaagttcgtacaaagac
attgatgaagttatggctaatcaaaccgatttggtggaggtgcaaatcacacttcaaccc
ttagctgtgattaaagcttaa
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