Oceanihabitans sp. IOP_32: FEZ18_11985
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Entry
FEZ18_11985 CDS
T06249
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
oci
Oceanihabitans sp. IOP_32
Brite
KEGG Orthology (KO) [BR:
oci00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
oci03009
]
FEZ18_11985 (rlmD)
Enzymes [BR:
oci01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FEZ18_11985 (rlmD)
Ribosome biogenesis [BR:
oci03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FEZ18_11985 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Cons_hypoth95
Methyltransf_15
Methyltransf_11
PrmA
TRAM
Methyltransf_12
FtsJ
PCMT
UPF0020
Methyltransf_2
Methyltrans_SAM
N6_N4_Mtase
DUF5590
Motif
Other DBs
NCBI-ProteinID:
QFZ55472
UniProt:
A0A5Q0JYX7
LinkDB
All DBs
Position
complement(2861019..2862431)
Genome browser
AA seq
470 aa
AA seq
DB search
MSRRKTRKQIFENIEVIDAGAKGKSIAKAPDGKVIFLNNTVPGDVVDVQTFKKRKAYYEG
KATIFHKLSDKRTKPACEHFGTCGGCKWQDMAYEHQLFYKQKEVTNNLTRIGHIELPEVT
PILGASNPYFYRNKMEFSFSDSRWLTVEEVQSDADLGDRNALGFHIPGMWDKILDIKKCH
LQADPSNAIRNAVKTFAVENNLEFFNTRNQTGLLRTMMIRTSSTGDIMVMIQFFKEDKLK
RELLLDFLAKTFPEISSLQYVINEKANDTIYDQEVICYKGQDHIFEEMEGLRFKINAKSF
YQTNSDQAYELYKITRDFAGLTGNELVYDLYTGTGTIAQFVAKKALKVVGVEAVPDAIKA
AKENAQLNKINNVEFFVGDMKQVFNTEFIDAHGQPDVVITDPPRDGMHKDVVEQILNIAP
KKIVYVSCNSATQARDLALMNSMYKVTKTQAVDMFPQTYHVENVVLLEKR
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtctagaagaaaaacaagaaaacaaatttttgaaaacatcgaagtgatcgatgctggt
gcaaaaggcaaaagtattgctaaagcaccagacggcaaggttatttttttaaacaatacc
gttcctggtgatgtggtagatgtgcaaacctttaaaaaacgcaaagcctattatgaaggg
aaagccaccatatttcataaactatccgataagagaaccaaacctgcttgcgagcatttt
ggcacttgcggcggctgtaaatggcaagatatggcatacgagcatcagttgttctacaaa
caaaaagaagttacaaataatttaacgcgtattgggcacattgagttgcctgaggttacc
cctattttaggtgcttcgaatccttatttttacaggaacaaaatggagttttcttttagc
gactcgcgatggctaacagtagaagaagtacaatcggatgcagatttaggcgatcggaac
gctttaggctttcatattccaggcatgtgggataaaattttagatataaaaaaatgccat
ttgcaagccgatccgtcaaacgccattagaaatgcggttaaaacatttgctgttgaaaat
aatttagaattcttcaacaccagaaatcaaacaggcctattacgaaccatgatgattcgc
acatcaagcacgggagacatcatggttatgattcagttttttaaagaggataaactcaag
cgtgaattgctattagattttctcgctaaaacttttccagaaatcagctcattacaatat
gttattaatgaaaaagcaaacgacaccatttacgatcaagaagtaatttgctataaaggt
caagatcatatttttgaggaaatggaaggcctgcgcttcaaaataaacgcgaaatctttt
tatcaaaccaattccgaccaagcttacgaactgtataaaataacaagagatttcgctggg
ttaacaggaaacgagttggtttacgacttatatacaggcacaggaactatagcacaattt
gtagcaaaaaaagcccttaaagtggtaggtgtagaagctgtaccagatgccataaaagct
gccaaagaaaatgcacaattaaataagataaataacgttgagttctttgttggtgatatg
aaacaggtttttaataccgaatttatagatgcccatggtcaacccgatgttgttattacc
gatccgccacgagatggtatgcacaaagacgttgtggagcaaatacttaatattgcgccc
aaaaaaatagtgtatgtaagctgtaatagcgcaacacaagctcgtgatttggccctaatg
aacagtatgtataaagttacaaagacacaagcagtagatatgtttccgcaaacctatcac
gttgaaaatgtggtactgttggaaaaacgataa
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