Oceanimonas sp. AH20CE76: N2M06_04550
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Entry
N2M06_04550 CDS
T11528
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ocj Oceanimonas sp. AH20CE76
Pathway
ocj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N2M06_04550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocj03019
]
N2M06_04550
Enzymes [BR:
ocj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N2M06_04550
Messenger RNA biogenesis [BR:
ocj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N2M06_04550
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
SNF2-rel_dom
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
XAU84295
LinkDB
All DBs
Position
complement(936112..937494)
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AA seq
460 aa
AA seq
DB search
MSFASLGLNEKLVQAINECGYTEPTPIQQQAIPLVLKGGDLLAGAQTGTGKTAGFGLPML
QRLSETKARPLANGRAPVRALVLTPTRELAAQVEENLRAYAKHTDLRTLVMFGGVSINPQ
MKALGRKVDIVVATPGRLLDHVSQRSIDLSRVEMLVLDEADRMLDMGFIRDIRRVLALLP
KQRQNLLFSATFSDEIKALAEDLLHQPEHIEVARRNATAETIAQRFFEVDKGRKRALLSY
HIGHHNWRQVLVFTRTKHGANRLAEQLGKDGLPAMAIHGNKSQGARTKALSEFKNGGIRV
LVATDIAARGIDISELPHVVNYELPHVAEDYVHRIGRTGRAGSNGEALSLVSAEEKPLLK
AIEKLIKQSADLEQVAGFEPDPNAPVTPLENSRGGNRGRHGGGQRSGGQRNGGQRNSQRA
SGNRNGGNGNGQRTGNRNGNGEGQRSGAPRRRSRPQAAGQ
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgcttccctcggtttgaacgaaaagctcgttcaggctattaacgaatgtggc
tatacagagccgacccccattcagcaacaagctattccgctggtattaaaagggggtgat
ctgctcgccggcgctcagaccggcaccggcaaaaccgccggctttggcctgcccatgctg
cagcgcctgagtgaaaccaaggcccgccctctggccaatggccgggcaccggtgcgcgct
ctggtacttactcctacccgtgaactggccgcccaggtggaagaaaacctgcgcgcctac
gccaaacacaccgatctgcgcaccctggtgatgttcggcggtgtcagcatcaacccgcaa
atgaaggccctgggccgcaaggttgatatcgtagtggccactccgggccggctgctggac
catgtatcccaacgctctatcgacctctcccgcgttgaaatgctggtgctggacgaagcc
gaccgcatgctcgacatgggctttatccgcgacattcgccgcgtactggcgctgctgccc
aaacagcggcagaacctgctgttttccgccaccttctccgacgaaatcaaggcactggcg
gaagatctgctgcaccagcccgagcacattgaagtggcccgccgcaacgccaccgccgaa
accattgcccagcgcttctttgaagtagacaagggccgcaagcgcgccctgctcagctac
catatcggccatcacaactggcggcaggtgctggtatttacccgcaccaagcatggtgcc
aaccgcctggccgagcagctgggcaaagacggcctgccggccatggccattcacggcaac
aagagtcagggtgcccgcaccaaggccctgagtgagttcaaaaatggcggtattcgcgtg
ctggtggccaccgacatcgcggcccgcggtatcgacatcagcgagctaccccatgtggtc
aactatgagctgccccatgtggcagaagactatgtgcaccgcattggccgtaccggtcgt
gccggcagcaacggcgaggcactgtcgctggtaagcgccgaggagaaaccgctgctgaaa
gccattgaaaagctgatcaagcaaagcgccgatctcgagcaggtggccggtttcgaaccc
gatcccaatgctccggtgactccccttgaaaattcacgcggcggcaaccgtgggcgtcat
ggtggcggccagcgttctggcggtcagcgcaatggtggtcaacgcaatagccagcgtgcc
agcggcaaccgtaatggcggcaatggtaacggtcagcgcaccggcaaccgcaatggcaat
ggcgaaggccagcgcagcggtgccccccgccgtcgctcacgtccgcaggccgcgggtcag
tga
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