Oceanimonas sp. AH20CE76: N2M06_06630
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Entry
N2M06_06630 CDS
T11528
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ocj Oceanimonas sp. AH20CE76
Pathway
ocj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
N2M06_06630 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocj03400
]
N2M06_06630 (recD)
Enzymes [BR:
ocj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
N2M06_06630 (recD)
DNA repair and recombination proteins [BR:
ocj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
N2M06_06630 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
AAA_11
UvrD_C_2
NAT10_TcmA_helicase
SH3_13
Viral_helicase1
AAA_22
UvrD-helicase
AAA_16
SLFN-g3_helicase
T2SSE
nSTAND3
PhoH
AAA_29
AAA_5
AAA_28
AAA_7
NTPase_1
Mg_chelatase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
XAU84692
LinkDB
All DBs
Position
1359458..1361455
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AA seq
665 aa
AA seq
DB search
MITTKTSIQELQSLLQQWVELGWLRALDSALAGFLAEQVPGADPRVLLAAALASHQLGHG
HVCLDLAATLAEPDFALSLPPEGEEGLADAWLPSLWLAGLTLSDWQQALAQSPLIAAKGE
AERPLVLSGERLYLRRYWSYEQGVAEALAARIRDDRDVPDDLPVWLERLFPEPLRINGER
QTDWQKLACALAASSGFTLITGGPGTGKTTTVVRLLALLQGTASQPLRIRLAAPTGKAAA
RLTESIGNQVVRLPVNETVRAHIPTEVSTLHRLLGSVPGSRHFRHHGGNPLPLDVLVVDE
ASMIDLEMMHSLLMALPAHARLLLLGDKDQLASVEAGALLGDLCSQAEQGLYTPERKAWL
EAVSGEQVAHPSLLAGDSERHALAQRVLMLRYSRRFAGGSGIGRLAEAVNSQQATLARTL
LGQYDDIASVRIKGEQDSSLNRLLYGGRGKALGYGHYLEVLNNTRPAVNTAFDDNAWHDW
ADSVLTAFDRFRLLCAVRRGPWGVEGLNLRIAGLLHRRGLLSAAEGWYEGRPVLVTRNDY
SLGLMNGDIGIALRLPEQDGHAVLRVAFARNDGSNELRFVLPSRLSEVETVFAMTVHKSQ
GSEFEHTALILPEALNPVLTKELLYTGITRASQHFTLLEPGRNVFEQAIARRVERRSGLL
ESLQR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccaccaaaacgtcaatacaggagctgcagtccctgctgcagcaatgggtggaa
cttggctggctcagagccctggacagcgccctggcgggctttctggctgagcaggtgcca
ggcgcagatccgcgtgtcctgctggcggcggcattggccagccaccagcttggtcatggc
catgtgtgtctggacctggcggccaccctggccgagccggactttgccctgtcgttgcca
ccggaaggagaagaaggcctggcggatgcctggctgccgtctttgtggctggccggactg
accctgagtgactggcagcaggcgctggcacaaagtccgcttatagcggccaagggagaa
gcggagcgaccgctggtgctcagtggtgaacggctttatctgcgccgctactggagttat
gagcagggagttgctgaagcgctggcggcccgtattcgagatgacagggacgtgcccgat
gatctgcccgtctggcttgagcggctgtttcccgagccgctcagaattaatggcgagcgc
cagaccgactggcagaagctggcctgtgccctggccgccagcagtggttttaccctgatc
accggcggccccggtaccggcaaaaccaccactgtggtgcggctgctggcgttgttgcag
ggcaccgccagccagccgttgcgcatcaggctggcggcacccaccggcaaggcggcggcc
cggctgaccgagtctattggtaatcaggtagtcaggctgccggtgaatgaaacggtacgc
gctcatattcccacggaagtgagcaccctgcatcgcctgctgggcagtgtgcctggcagc
cggcattttcgtcatcatggagggaatccgctgccgctggatgtgctggtggtggatgag
gcgtccatgattgatctggaaatgatgcacagcctgctgatggccctgccggcgcatgcc
cgtctgttgttgctgggagacaaggatcagctggcttcagtggaagcgggagcgctgttg
ggagacttgtgcagtcaggccgagcagggactctatactccggagcgcaaagcctggctg
gaagcggtcagtggtgaacaggtggctcatccgtcactgctggccggagattcagagcgc
cacgcgctggcccagcgggtgctgatgttgcgctattcccgccgctttgccggtggctcc
ggcattggccggctggcggaggcagtaaacagccagcaggcgacgctggcccggaccttg
ctgggccagtatgacgatattgcctcggtacgcataaagggcgagcaggacagcagcctg
aaccgtttgctttatggtggcagaggtaaggcgctgggctacggccattatctggaagta
ttgaacaacacccgcccggctgtgaataccgcctttgatgataacgcctggcatgactgg
gccgacagtgtgctgacggcctttgatcgttttcgccttttgtgtgcggtgcgccgcggc
ccctggggggtggaagggctgaacctgcgcattgccggtctgttgcaccggcgcggtctg
ctcagcgctgctgaaggctggtatgaaggccggcccgtgctggtgacccgcaatgattac
agcctggggctgatgaacggcgacatcggcattgctctgcggctgccggaacaagacggt
cacgccgtgctcagggtagcgtttgcccgcaacgacggcagtaacgagctgcgttttgtg
ctgccaagccggctgagcgaggtggaaaccgtgtttgccatgacagtgcacaagtctcag
ggctcggagtttgaacatacggcgctgatcctgcccgaggcgctgaatccggtgctgacc
aaggagctgctttataccggcattacccgggccagccagcattttaccttgctggagccg
ggccggaacgtatttgaacaggctattgcccgccgtgttgagcggcgcagcggcctgctt
gaaagcctgcagcgctag
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