Oceanimonas sp. AH20CE76: N2M06_08335
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Entry
N2M06_08335 CDS
T11528
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ocj Oceanimonas sp. AH20CE76
Pathway
ocj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N2M06_08335 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocj03019
]
N2M06_08335 (rne)
03009 Ribosome biogenesis [BR:
ocj03009
]
N2M06_08335 (rne)
Enzymes [BR:
ocj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
N2M06_08335 (rne)
Messenger RNA biogenesis [BR:
ocj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N2M06_08335 (rne)
Ribosome biogenesis [BR:
ocj03009
]
Prokaryotic type
rRNA processing factors
N2M06_08335 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
XAU82096
LinkDB
All DBs
Position
1701231..1704170
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AA seq
979 aa
AA seq
DB search
MKRMLINATQEEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARNYFPEGYTYQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSRLKLPDGMGLIVRTAGVGKSGEEL
EWDLNVLKAHWASIQEAADSRTAPFLIHQESNVIVRAIRDYLRRDIGEILIDNPVVFERA
KQHIQLVRPDFVNRVKLYEGDVPMFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSSRATKGGDIEETALQTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRQDRARIQLGRISRFGLLEMSRQRLRPSLGESSTHVCPRCLGQGTIRDNESLAL
AILRLIEEEALKDNTGQIHGQVPVDVAAYLLNEKRKSIANLENRYKVDIFIIPNEQLETP
HFDVTRVRSSDVEDVTSFELKTEVEQTAYQPRQHEAAKKIEQPVLQGFTAPAPAPAATSP
AAVKPSQPSQPGLLSRLFSTIAGWFKSSEQPQASATQEQTSADRNERSNNRNQRNGERQD
RRQRGDRRNNNRNRKPRDEERNQKPAVAAAQDNTEQQPKAERPRRERRKPRREQQPERAA
RQQEQQTAQNVPQQTQAPAPQQEAQQEQAREQAVAERRERRQLRKQVRLDSEGRTQDAKP
APEKTREPEQTAAPASEQPQPHKRAPKRKRINEDSRRRRREETIAALIEREGEEKWVASE
ATQAEQQPAPVQPEPKPAQEPAKAEQPVQEPVKTEPEQQQPEPQAEEAKPDVVQEVVAQD
EKAQPQVKAEEPKAVQEAPTEPAVTAEPVAEAVQQTKAEPEAAPTAEQETKAEPKAAAAP
EEPAAAQPAKEAKPAPVALGRYLAARKASAPMAKPPVVEAAPYVKPDYPPLVREPIATSG
RQGGSINATNQASAPMAKP
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaacccaggaagaggagttgcgcgttgccctggtggac
gggcaaaggctgtatgatctcgatattgaaagccccggccacgagcagaaaaaagccaac
atttacaaaggcaaaatcacgcgggtagaacccagcctggaagccgcctttgttgactac
ggtgccgagcgccacggctttttgcccctcaaggaaattgcccgcaactatttccctgaa
ggctacacctatcagggtcgccccaacatcaaggaagtggtcaaggaaggtcaggaagtt
attgttcagattgataaggaagaacgtggcaacaaaggggctgcgcttaccacctttatc
agcctggccggctcctacctggtactgatgcccaacaacccccgtgccggtggtatctca
cgccgcatcgagggcgacgagcgcactgaactgaaagaagccctctcccgcctcaagttg
cccgacggcatgggcctgattgtgcgcaccgccggtgtgggtaaatccggtgaagagctg
gaatgggatctgaatgtactgaaagcccactgggcttccattcaggaagccgccgacagc
cgtaccgctcctttccttatccatcaggaaagcaatgtcattgtgcgcgccattcgcgac
tacctgcgccgggatatcggtgaaattcttatcgataaccccgtggtatttgaacgtgcc
aagcaacacattcagctggtgcgccccgattttgtcaaccgggtgaagctgtatgagggc
gacgtgcccatgttcagccactaccagattgagagccagattgaatccgcgtttcagcgg
gaagtgcgcctgccgtccggcggcagcatcgttattgaccccaccgaagcgctcacctcc
atcgatatcaactcgtcccgggccaccaagggcggcgatattgaagaaaccgcgctgcag
accaacctggaagcggcagaggaaattgcccgtcagctgcgcctgcgcgatctgggcggc
ctggtggtgatcgactttatcgacatgacaccagtgcgccaccagcgtgaagtggaaaac
cgcctgcgcgacgccgtgcggcaagaccgtgcccgcattcagctgggtcgtatttcccgc
tttggtctgctggaaatgtctcgtcagcgcctgcgtccgtctttgggcgagtccagcacc
catgtgtgcccccgctgtctgggtcagggtaccattcgcgacaacgaatccctcgccctg
gccattctgcgcctgatcgaggaagaagcgctgaaagacaataccggccagatccacggt
caggtaccggtggacgtagccgcctatctgctcaacgaaaagcgcaaatccattgccaat
ctggaaaaccgctacaaggttgatattttcatcattcctaacgagcagctggaaaccccg
cacttcgacgtaacccgggtgcgcagcagcgatgtggaagacgtcaccagctttgaactg
aaaacagaggtagagcaaactgcctatcagccgcgccagcatgaagccgccaaaaaaatt
gagcagccggtcctgcagggctttactgcccccgctccggctccggcagcgaccagcccg
gcggcagtaaaaccgtctcagcccagccagcccggccttctgagccggctgttcagtacc
attgccggctggttcaagagcagcgaacagccgcaagcctctgccacacaggagcagact
tctgccgaccgcaacgagcgcagtaacaaccgcaaccagcgtaacggtgagcgccaggac
cgtcgtcagcgcggagatcgtcgcaacaacaaccgtaaccgcaagccgcgtgatgaagag
cgcaaccaaaagccggccgtcgccgccgcgcaggacaacaccgagcagcaaccgaaggcc
gagcgtccgcgccgtgaacgtcgcaagccccgtcgtgagcagcagcccgagcgcgccgcc
cgtcagcaggagcagcaaacggctcagaacgtgccgcaacaaactcaggcccctgccccg
cagcaggaagcacaacaggagcaggcacgtgaacaggccgtggccgagcgccgcgagcgc
cgtcagctgcgcaaacaggtacgtctcgacagtgagggccgcactcaggacgccaagccc
gcacccgagaaaacccgtgagcccgagcaaaccgctgcacctgccagcgagcagcctcag
ccgcacaagcgtgcacccaagcgcaagcgcatcaatgaagacagccgtcgtcgccgccgg
gaagaaaccattgctgccctgattgagcgcgaaggtgaagaaaaatgggtagcttctgaa
gccactcaggccgagcaacagccagctcctgtgcaacccgagcctaaaccggctcaagag
ccggctaaggcagagcagcctgtgcaagaaccggttaaaaccgagcccgagcagcaacag
cctgagccgcaagccgaagaagccaagccggatgtagttcaggaagtggtagctcaggac
gaaaaagctcagccacaagtgaaagcagaagagcccaaagcggtacaggaagcaccgaca
gagcctgcagttactgcagagccagtggcagaagctgtacagcaaaccaaggccgagcct
gaagcagcgccaacagctgaacaggaaaccaaggccgagcctaaagcagctgcagcgcca
gaagagcccgctgctgcgcagcctgccaaagaggcaaagccggctcctgtggcactgggt
cgttacctggctgcccgcaaggcctcggcacccatggccaaacccccggtagtggaagca
gcaccttatgtgaagcccgactacccgcctctggtacgcgagcccatcgccaccagtggc
cgccagggcggcagcatcaacgctaccaatcaggcctcggcccccatggccaaaccctga
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