Oceanispirochaeta crateris: EXM22_03370
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Entry
EXM22_03370 CDS
T06177
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ock
Oceanispirochaeta crateris
Pathway
ock03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ock00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXM22_03370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ock03019
]
EXM22_03370
Enzymes [BR:
ock01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXM22_03370
Messenger RNA biogenesis [BR:
ock03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXM22_03370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
Utp25_C
UTP25_NTPase-like
AAA_22
SWI2_SNF2
SNF2-rel_dom
SPOR
Motif
Other DBs
NCBI-ProteinID:
QEN07071
UniProt:
A0A5C1QHM1
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All DBs
Position
751988..753277
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AA seq
429 aa
AA seq
DB search
MTFTQLGLKEEILKAVQEKGYKETTPIQAQAIPAIMKSRDVLGGAQTGTGKTAAFALPLL
HRLSESERKGKQPRVLVLTPTRELAEQVGESFRNYGKYVQLKTTTVYGGVKINPQIGTLR
KGVDILVATPGRLLDHLSQKTVSLSQIETLVLDEADRMLDMGFIHDIKRIMKQLPQQRQN
LLFSATYSKDIRKLSDGILNNPVSVEVAARNTAAEMVDQSIYKIDKRQKRFLLSHLIKEE
AWFQVLVFVRTKHGANRLAKQLASEGISTAAIHGDKSQNARIKALESFKKGDLQALIATD
VAARGIHLEGLSHVVNFDLPQQPEDYVHRIGRTGRAGKSGSAISLVSSDEKGMLQRIELL
LKKSIHVKTCTDFVPAELAPVHSSPARSFRGPRQGTGRNYYQSGDHSRDGAPRQGRSRAR
KAGSSSFSR
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgacatttactcaattagggcttaaagaagaaattcttaaagcagttcaggaaaaggga
tataaagaaaccactcccattcaagcccaggccataccggccatcatgaaatcacgggat
gtactcggtggagcccagacgggtacaggcaaaaccgctgcctttgcattaccactatta
catagactctctgagtcagagagaaagggaaaacaaccccgggtactcgtgcttacgccc
accagagaactggcggaacaggtcggagagagttttaggaactacggaaaatacgtacaa
ctcaaaacaaccacagtttacggaggggtaaaaatcaaccctcagattggtactcttaga
aaaggggtcgatatactcgtagcaacaccgggtagactattggatcatttgagtcagaaa
acggtgagtctttctcaaattgagactctggttctggatgaagcggataggatgctggac
atgggttttattcatgatataaaaagaatcatgaaacagctgccccagcagagacaaaac
ctgcttttttctgccacttacagtaaggacatccgaaaattatccgacggaatactcaat
aaccccgtttctgtcgaagttgccgccaggaacaccgcggctgagatggtggaccaatcc
atatacaaaattgataaaagacagaagaggttccttctatcccacctcatcaaagaggaa
gcctggtttcaggtccttgtttttgtaaggacaaaacacggagctaaccgtctggcgaag
caattggcctcagagggtatttcaacggctgctattcatggtgacaagagtcagaatgct
aggataaaggctctggaaagttttaagaaaggtgatttgcaggcccttatagccaccgat
gttgccgccagaggtattcacctggaaggtctgagtcatgttgtgaacttcgatttgccc
cagcagcctgaggactatgtacaccgtattggcagaacgggccgggccggaaaatcagga
tcggcgatttccctggtctcttccgatgagaaggggatgctccagaggatagaactcctc
cttaaaaaaagtatacatgtgaaaacctgtaccgattttgttccagctgaactggctcct
gttcactcctcaccagccagatcatttcgtggaccgagacagggaacaggacggaattat
tatcagtctggagatcattctcgtgacggagctcccaggcaaggacggagcagagccagg
aaagctggcagcagttctttctcaagataa
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