Oceanispirochaeta crateris: EXM22_05975
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Entry
EXM22_05975 CDS
T06177
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ock
Oceanispirochaeta crateris
Pathway
ock02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ock00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EXM22_05975 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ock03021
]
EXM22_05975 (rpoD)
Transcription machinery [BR:
ock03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EXM22_05975 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
WapI
FAM176
DUF6447
Motif
Other DBs
NCBI-ProteinID:
QEN07555
UniProt:
A0A5C1QHE8
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Position
1308798..1310729
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AA seq
643 aa
AA seq
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MSEIETDPAISKLLEYVKTKKSLTYSEMNELLPDDIVNSEKIEAVISLLEEMNVNIIEDE
PALDGVDPEEDLVDDLEDDDIDDGVASIISDPVVVVASDDTDGEPDTDGIIDEDELELDD
DLEEDDDESSKSDEEEEPERGDTRKLVFNEKDSSIDDPIRLYLREIGKENLLTALQEVEL
SKQMEEGEEIIKNILKTSGMIIPEFFHLAQKAFSKADPREMNFSKKEISDYLAEKRRLNQ
YYREPLKSIFPSLKAYMDQKEKIAATDGDVIFDKKLTAKRVELLEAIISIDIHQEEIFYL
SEKYIDAARKIKQNRRKQDKIERTLRVSNMKELRNLGRGLASKVKRHEIEDSLGLTSDEI
KELIRQVQVAEKNLHDLEVEFENTSEDLLIKAQDINHGRTMMKNAKDRLIKANLRLVVSI
AKKYTNRGLHFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTI
RVPVHMIEQINKVVRESRQLMQIKGREPTDEEIAERLGWTVARVKSVKNVAREPISLETP
IGEEEDSLLGDFIEDKDVENPANQTAFKILQEQLQEVLETLPPREQEVLKMRFGLEDGYS
LTLEEVGLYFNVTRERIRQIEAKALRRLRHPKRSRRLKDYLEN
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaattgaaactgaccccgcgataagtaaattattagagtatgtaaaaacaaaa
aaaagtctcacatatagcgagatgaatgaattgcttcccgatgatattgtgaactcagaa
aagattgaagctgtcatttcattattagaagaaatgaatgtgaatattatcgaggatgaa
cctgctcttgacggtgtcgaccctgaagaagatctggtagacgatcttgaagatgatgat
atagatgatggagtggcctctatcatttcagatccggtggttgtcgttgccagtgatgat
actgatggagaacccgatactgatggcatcatagatgaagatgaactggaactcgatgat
gatcttgaagaagatgatgacgaaagtagcaagagtgacgaggaagaggaacctgaaaga
ggagacacaagaaaactcgtttttaacgagaaagactcctctatagatgatcccataagg
ctctacctcagagaaataggaaaagaaaatcttctcacagccttacaggaagtagaactt
tctaaacagatggaagaaggcgaggagattataaaaaatatcctcaaaacctcgggaatg
attattccagaattctttcatctggcccagaaagctttttcaaaagccgatccacgagaa
atgaatttttccaagaaagagatatcggattatctggctgaaaaacgaaggctgaatcag
tattacagagaacccttaaagtcaatttttccatctttgaaagcctatatggatcaaaaa
gagaaaattgcagcgacagacggggatgttattttcgataaaaaactgactgctaaaaga
gtggaactactggaagcaatcatcagtatagacatacatcaggaagagattttttatctt
tctgagaagtatattgatgctgccaggaaaattaaacagaatcgaagaaaacaggacaag
attgagcggactttaagagtcagcaacatgaaagaactgagaaatcttggaaggggactg
gccagcaaagtcaaaagacatgaaattgaagattctttggggcttaccagtgatgaaatc
aaagaactcatccgtcaggtacaagtggcagaaaagaatctccatgatcttgaagttgaa
tttgaaaatacctccgaagatcttcttatcaaggctcaggacataaatcatggaagaacc
atgatgaagaatgccaaagaccgcttgattaaagccaaccttagattggttgttagtata
gccaaaaaatatacaaacagaggtcttcacttttttgatcttgtccaggaaggaaatatc
ggactcattaaagctgttgagaagttcgaatatcgtaaggggtataaattctcaacttat
gcgacatggtggatccgacaggccattaccagatctatttcagatcaggcaagaacaatc
cgtgttcctgtacatatgattgaacagatcaataaggttgttcgtgaatccagacagttg
atgcagataaaaggaagagaaccaactgatgaagaaattgcagaaagactgggctggact
gttgccagggtcaaatctgtaaaaaatgtagccagagagcccatatctcttgaaactccc
attggagaggaagaagattcgcttctgggagacttcattgaagacaaagatgttgagaat
ccggcaaatcagacggctttcaagatccttcaggaacaacttcaggaagttttggaaaca
ctgccgccaagagaacaggaagtgcttaaaatgagatttggcctggaagacggctactca
ttgactcttgaggaagtagggttgtattttaatgtcactagggaaagaatacgacagatt
gaggctaaggcgctccgcaggctcaggcatccaaagagaagccgccgattaaaagactat
ctggaaaattaa
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