Oceanispirochaeta crateris: EXM22_06465
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Entry
EXM22_06465 CDS
T06177
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ock
Oceanispirochaeta crateris
Pathway
ock03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ock00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXM22_06465 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ock03019
]
EXM22_06465 (pnp)
03016 Transfer RNA biogenesis [BR:
ock03016
]
EXM22_06465 (pnp)
Enzymes [BR:
ock01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
EXM22_06465 (pnp)
Messenger RNA biogenesis [BR:
ock03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
EXM22_06465 (pnp)
Transfer RNA biogenesis [BR:
ock03016
]
Prokaryotic type
tRNA degradation factors
EXM22_06465 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
PC-Esterase
KH_KhpA-B
DUF4120
S1_2
Motif
Other DBs
NCBI-ProteinID:
QEN07648
UniProt:
A0A5C1QJZ4
LinkDB
All DBs
Position
complement(1419550..1421664)
Genome browser
AA seq
704 aa
AA seq
DB search
METFKFKIGDDEIIIETGKMAKQANGSVLVRCGGSAVMATVCCGSESVEGLDYVPLSVDY
NERYYAAGKIPGGFLKREARPKDKEILVSRLIDRPMRPLFYKDFGREIQVVPMTISTDQV
HTPDVLGMLAAFAAVMISDIPFNGPVAAVRVASIKGEYVINPSFQQIEESELDIIVAASN
DGICMVEGGGQQVSEDLMLGAIQAAEKTLADICAFLVDMTEKCGKEKLPLVEKTIKLDKW
DDMWAEAYPLMETAVFTDGKFERRQAIKTIKKDMMAKYDAEIPEEQKKLVGDLFEELERV
IIRKSILENNLRCDKRPSDKIRDISCEIDLLDRCHGSALFTRGETQSLGITTLGSVQDEQ
IMDDIDGDRRSNFMLHYNFPPYSVGETGRLGTGRREIGHGHLAQRAIEGVLPKKEEFPYT
IRVVSEILESNGSSSQATICSGSLSLLDAGVPLKKPVAGIAMGLIKEGDDFVVLSDILGE
EDHMGDMDFKVAGSEDGITAFQMDIKIPGISIDIMKKALSQALEGRLYILKIMNETISEP
SAEVSEFAPSVTSFKVDVDKIGLLIGPGGKNIKSMSEKSGAKINIDEDGTVSIFCREKKG
TDLAEAMVKGMIEEPEVGTIYKAVVKRIMDFGAFLEILPGKEGLCHISKLSNERVNNVSD
VLKEGQEVEVRLIEVDRMGRINLSIVDAQNKDWKPQRSGGMNRR
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggaaacttttaaatttaaaattggtgatgatgaaatcatcatagaaactggcaaaatg
gccaaacaggctaacggttcagtcctggtacgttgtggtggttctgctgtaatggcaacc
gtctgctgcggttcagaatctgttgaaggattggattatgtaccactgtcagttgactac
aatgaaagatattatgctgccgggaaaattcctggtggatttttgaaaagagaggccaga
ccaaaggataaagaaatccttgtatcacgtttgatcgaccgtcccatgaggcctcttttc
tataaagattttggacgtgagatccaggttgtacccatgaccatttctacagaccaggta
cacacccctgatgttttgggtatgcttgcagctttcgcggctgttatgatctctgatatt
ccatttaatggacctgtggccgctgtaagagttgcctcaattaagggtgaatatgttatt
aacccctcttttcagcagattgaagagagtgaactcgatattattgttgctgcctccaat
gacgggatctgcatggttgaaggtggtggacaacaggtatcagaagacttgatgctgggt
gctattcaggccgctgaaaaaactcttgctgatatctgcgcatttcttgttgatatgaca
gagaaatgtggaaaagaaaaactcccgctagtagaaaaaactattaaacttgataaatgg
gacgatatgtgggccgaagcctacccactgatggaaaccgctgttttcacagatggaaag
tttgaaagacgtcaagccattaaaaccattaaaaaagatatgatggcaaagtatgatgcc
gagattccagaagagcagaagaaacttgtgggcgatctttttgaagaacttgaacgtgtg
ataatcagaaagtctattcttgaaaataatttgcgctgcgataaaagacccagtgataaa
atccgtgatattagctgtgagattgatcttctggatcgttgtcatggtagtgctcttttt
actcggggtgaaactcagtctctgggtataaccactctgggaagtgttcaggatgagcag
attatggatgacatcgatggtgatcgaagatccaactttatgctccattacaattttcct
ccttattcggtaggagaaacaggacgacttggtaccgggcgccgagaaataggtcacgga
catctggctcagagagccatcgaaggtgtccttcctaagaaagaagaatttccctatacc
attcgtgttgtctctgagattcttgaatcaaatggttcttcctctcaggctacaatctgt
agcggttcattgagcctactggatgcgggtgtccctctaaagaaacctgttgccggtatt
gccatgggcctgattaaagagggagatgactttgtcgttctctctgatattctaggtgaa
gaagaccacatgggtgatatggatttcaaggttgctggttccgaagatgggattactgcc
tttcagatggatatcaaaataccaggaatcagtattgatatcatgaaaaaggctctttcg
caggccttggaaggtcgtttgtacatccttaaaatcatgaatgaaaccatttccgagccc
agtgccgaagtttctgagttcgcacccagtgtcacttcttttaaagtggacgttgataaa
attggtctcctgattggccccggtggtaagaatattaaaagcatgtctgaaaagagtggt
gctaaaataaatattgatgaagacggaactgtcagcattttctgccgcgagaagaaaggt
accgatctggcggaagccatggtgaagggaatgatcgaagaacccgaagtcggaaccata
tacaaagcggttgttaaaagaatcatggatttcggagccttcctggaaattcttcctgga
aaagaagggctttgtcatatttcaaagctttccaatgaacgtgttaataatgtttcagac
gttttaaaagaaggtcaggaagtagaagtacgactgattgaagtggatagaatgggccgc
attaacttgagcatcgtagacgctcagaacaaagactggaaaccccagaggtccggtgga
atgaaccgcaggtaa
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