Oceanispirochaeta crateris: EXM22_18015
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Entry
EXM22_18015 CDS
T06177
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ock
Oceanispirochaeta crateris
Pathway
ock03410
Base excision repair
ock03430
Mismatch repair
ock03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ock00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EXM22_18015 (recJ)
03430 Mismatch repair
EXM22_18015 (recJ)
03440 Homologous recombination
EXM22_18015 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ock03400
]
EXM22_18015 (recJ)
DNA repair and recombination proteins [BR:
ock03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
EXM22_18015 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
EXM22_18015 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EXM22_18015 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QEN09787
UniProt:
A0A5C1QQJ3
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All DBs
Position
3982521..3984623
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AA seq
700 aa
AA seq
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MKWTKKDIEGGKVRQLAERTGMDLLQASILLRRGVDLDKSRFFLEDDFRYLHNPFLFRHM
ADVVDRIQMAAEEEERVLICGDRDVDGITSTILLYEALLDSGIEAEWRVPIGEDAYGLNP
ELIKDFASRDGTLIFCVDCGISDFEEISLAGELGIDVVVLDHHNPRGGKLPEALCIVNPK
VQEDSYPFEGLAGCAVVSKLIWALCFARTELYGHEYCFFYINEEKGQLEIYKYVNLVEVS
RKFYPLDQEIPLEELSESLRGWPLFSYDLSSQKQTLDQIFGKAAELHITDIADQVCRDFP
SLQGLSFQILRDKSRLARYSLQAPDNGDAFLHLFSGLMLKRYQGAFEPFEKALDLVALGT
LADLMPLEDENRVLVKRGMELLGKAVRPGLRELFIRQRLLGKPLETNDVSWMVSPWINSS
GRMGQADKAVELFITEDEAIRTRLADALHDLNQERKKLGDSLWDDAVEEARTSQEGLHNK
LTMVRSRQIPRGITGILAAKMVNTFSVPSLILSRQEDGSLSGSIRSPRGCSIQSLLHAHA
DLFIDFGGHDCAAGFSMEGSNEEAFVRRLGEFCKTWKPEISEDIPEVDAEIPVEYLNPEL
WEMVSRLGPYGEGFRPLLFFSRNLLIEKSELIGKEPQNHLKFLLSSETAKFPALYWNGAE
NFKDYMSPDNRVNLLYHVSRNYYMNRESLQITVIDMEPAN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaaatggacaaaaaaagatattgaaggcggcaaagtccgccaactcgctgaaagaacc
ggaatggatttgcttcaggcatccatcctcttgcggagaggagtggatctcgataaaagc
cgatttttcctggaggatgattttcgttacctccataacccttttcttttcaggcatatg
gctgatgtggtggatcgaatccagatggccgccgaagaggaagaacgtgttctgatctgc
ggcgaccgggatgtggatggaatcacctcgacaatcctcctttatgaagcccttctggat
tctggaattgaggccgaatggagagtccctatcggggaagatgcctacggactgaatcct
gagcttatcaaagattttgcctctcgagacggaactctgattttctgtgtggattgcgga
atctcggattttgaggagatctctctggcgggtgaactgggaatcgatgtggttgttctg
gatcaccacaatcctagagggggcaaactcccagaagccctttgcatcgtcaatcccaag
gtccaggaggattcttatccctttgaaggattggcgggctgtgccgttgtatctaaactc
atctgggctctttgctttgcaagaaccgagctctacggtcatgagtactgcttcttctac
atcaatgaagaaaagggacagctggaaatatataagtatgtcaatttggtagaagtcagc
cggaagttttaccccctggaccaggaaattcccctggaggaactctccgaatccctgcgg
ggctggcctctgttcagctatgatctctcctcgcagaagcaaactctggatcaaattttc
ggtaaggcggcagaacttcatattactgacatagccgatcaggtctgtagagactttcct
agtttgcaaggactgagttttcaaattctccgggataaaagcagactggcccggtactct
cttcaggctcctgataatggggatgccttccttcatctattttcagggctgatgcttaaa
cgctatcagggggcctttgagccctttgaaaaggctctggatctagtagccttgggcact
ttggcggatcttatgcctctggaagatgaaaaccgtgttcttgttaaaagaggaatggag
cttttgggcaaggccgtcagaccgggccttcgtgaactctttatacggcagagattgctg
gggaagcctcttgaaacgaatgatgtttcttggatggtctccccctggatcaactcttcg
gggaggatgggtcaggctgataaggctgtagaactgtttataacagaagatgaagctatc
aggactcgtctggccgacgcacttcatgacttgaaccaggagcggaaaaagctgggagat
tccctttgggacgacgctgtggaagaagcaagaaccagtcaggaaggcttgcataataag
ttgaccatggtccggtcccggcaaataccccgggggatcacaggcatcctagccgcgaag
atggtgaacacattttcggtcccttctttgatcctgtcccgccaggaagatggaagtctc
tccgggtctatccgcagtcctcggggctgttctattcaatccctgctgcatgcccatgca
gatctctttatcgattttggaggacatgactgtgccgccggtttcagcatggagggctca
aatgaagaggcctttgtaagacggctcggtgagttctgtaagacctggaaacccgaaata
tcagaagatattcccgaagttgatgccgaaatcccagttgaatacttgaatcctgagctc
tgggagatggtcagccgcttaggcccctatggcgaaggattcaggcccttactctttttt
agccggaacctcctgattgaaaaatcggagctcattggcaaggagcctcagaaccatctg
aaattccttttatcatctgaaacggccaaattcccggcgctctactggaatggcgcggaa
aatttcaaagattatatgagtcctgacaacagggtgaatctgctgtatcatgtaagccgg
aactattatatgaatcgggaatccctgcagatcacagtcatcgatatggagccagccaat
tga
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