Ochrobactrum sp. EEELCW01: GTN27_00470
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Entry
GTN27_00470 CDS
T07148
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
ocl
Ochrobactrum sp. EEELCW01
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocl03016
]
GTN27_00470 (thpR)
Enzymes [BR:
ocl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
GTN27_00470 (thpR)
Transfer RNA biogenesis [BR:
ocl03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
GTN27_00470 (thpR)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
YhiY
Motif
Other DBs
NCBI-ProteinID:
QTN01740
LinkDB
All DBs
Position
1:complement(97523..98113)
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AA seq
196 aa
AA seq
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MPRLFTALEIPRDAALSLSLLRGGLPGARWIDVENYHITLRFIGDVEGHVADEVANALDR
VRRPEFMLNLSGVNAFGSKKPHSIYAGVSPSPELNALQAEIERICRRLHIPADPRKFTPH
VTLARLRNPRIEDVVRYLSSRGNFATLPFKVGRFVLMSSRDSVGGGPYIVEEAWPLVARS
GQNWSASAMEAARTIR
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgtcttttcactgccctcgaaatcccgcgcgacgccgcgctttcgctctcgttg
ttgcgaggcggtcttcccggcgcacgctggattgatgtcgaaaactaccacataacgctg
cgttttatcggagatgtggaaggccacgtggccgacgaggttgccaatgcgcttgatcgc
gtgcggcggccggaattcatgctcaacctgtcgggtgtcaatgctttcggttccaaaaag
ccgcacagcatctatgcgggtgtatccccctcgcctgagctcaacgcattgcaggcggaa
atcgaacggatctgccggcgacttcacattcccgccgacccgcgcaagttcacgccccat
gtgacactggcgcggctgagaaatccccgcatcgaggatgtggtgcgctatctctcctca
cgtggcaacttcgcgacgctgcccttcaaggtgggacggttcgtgctgatgtcgtcacgc
gattccgtcggtggcggaccttatatcgtggaggaagcctggcctttggttgcccgttcc
ggccagaactggtcggcaagcgcgatggaggctgccagaaccatccggtaa
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