Ochrobactrum sp. EEELCW01: GTN27_00710
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Entry
GTN27_00710 CDS
T07148
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ocl
Ochrobactrum sp. EEELCW01
Pathway
ocl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTN27_00710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocl03019
]
GTN27_00710
03009 Ribosome biogenesis [BR:
ocl03009
]
GTN27_00710
Enzymes [BR:
ocl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GTN27_00710
Messenger RNA biogenesis [BR:
ocl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GTN27_00710
Ribosome biogenesis [BR:
ocl03009
]
Prokaryotic type
rRNA helicases
GTN27_00710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QTN01785
LinkDB
All DBs
Position
1:160208..162142
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AA seq
644 aa
AA seq
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MSLPETIAPALSGALAARGYNTLTAVQNAVLAPETLDADLLVSAQTGSGKTVAFGLAMAN
TILEDELRFSDAGAPLAMIIAPTRELALQVRRELEWLYADTGARIASCVGGMDIRTERRA
LERGAHIVVGTPGRLRDHITRDALDMSELRAVVLDEADEMLDMGFREDLEFILGEAPEDR
RTLMFSATVPKQIAQLAKRFQNDALRLTVQSETSQHADIDYVAMPVPPHERDHAIINTLL
YYDSQNSIIFCSTREAVKHMASRLSNRGFAVVALSGELSQAERNNALQAMRDGRARVCVA
TDVAARGIDLPNLDLVIHADLPNNPETMLHRSGRTGRAGRKGTCVLVVPFSRRRTAERLL
HMAKLDAQTVPAPSIAAVQAKTNERILNAEVFNQPVEEEYQDLLKALTERYTPEQIAAAF
LNREVASYPAAEEVSDAPVHPVGGKKPRDRFEKGERSDRGDRFERGERRERGEPGERFDR
NAHFDGVWFSVSAGRKHRADPKWLLPLICKAGDVSKRDVGSIKIFDNETRFEITASKADE
FRRSVEERGTGEKGLVIRTAVAGAGGDAAPREGKGGFKPRGDKSKEGGFRDGYKSDGYKG
DRSKGDKWDKPRDFSRGDDFKKDGFKKGGKKPEGGGYSKKRRGE
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgtctttgcccgaaaccatcgctccggctctgtccggagcattagccgctcgcggttat
aatacactcaccgccgttcaaaacgccgttctggcgcccgaaacgcttgatgccgatctt
ctcgtttccgcacagaccggatctggcaagacggtcgctttcggcctcgcaatggccaac
accatcctcgaagacgagctgcgtttcagcgatgccggtgcgccgcttgccatgatcatc
gcgccgacgcgcgaactggcacttcaggttcgccgcgagctggaatggctttatgccgat
accggcgcgcgcatcgcatcctgcgttggcggcatggatatccgcaccgagcgtcgcgcg
ctggaacgtggcgctcatatcgttgtcggtacgccaggacgtctgcgcgatcatattacc
cgtgacgctctcgacatgtcggagctgcgtgctgtcgttctcgatgaagccgacgaaatg
ctcgacatgggctttcgcgaagatctcgaattcatcctcggcgaagcaccggaagaccgc
cgcacgctgatgttctcggcaaccgtgccgaagcagattgcccagcttgccaagcgcttc
cagaacgatgcacttcgcctcaccgtccagagcgaaaccagccagcacgccgatatcgat
tatgtcgccatgccggtgccgccgcatgagcgcgaccacgcgatcatcaatacgctgctc
tattacgattcacagaactcgatcattttctgctcgactcgcgaagcggtgaagcatatg
gcaagccggctttccaatcgcggctttgccgtggttgcgctgtcgggcgaattgagccag
gccgaacgcaacaacgccttgcaggcaatgcgcgacggtcgtgcccgcgtctgcgtggca
accgacgttgccgcgcgcggcatcgatctgcccaatctcgaccttgtcattcatgccgat
cttccgaacaatcccgagacgatgctgcatcgttcggggcgtacgggtcgtgccggtcgc
aagggcacttgtgtgctggttgtaccgttctcgcgtcgccgcactgcagagcgccttctg
catatggcgaagcttgatgcgcagacggttccggcaccaagcatcgctgctgttcaggcc
aagaccaatgagcgtattttgaatgcggaagtcttcaaccagccggttgaggaagaatat
caggatctcctgaaggcgctgaccgagcgttatacgccggaacagattgccgctgctttc
ctcaaccgcgaagtggcttcctatccggcagcggaagaagtttccgatgcaccggtgcat
ccggttggtggcaagaaacccagagatcgttttgaaaaaggcgaacgttctgaccgtggc
gaccgcttcgaacgcggcgagcgtcgtgagcgtggcgagccgggcgaacgtttcgaccgc
aatgcacactttgacggcgtttggttctcggtttctgccggtcgcaagcatcgcgccgat
ccgaaatggctgctcccgctcatctgcaaggcgggcgatgtttcaaagcgcgatgtcggt
tcgatcaagattttcgacaatgaaacccgcttcgaaatcacggcttctaaggccgatgag
ttccgccgttcggtcgaagaacgcggcaccggtgaaaagggtcttgtgatccgcactgcc
gttgcaggtgcaggcggtgacgctgctccgcgcgaaggcaagggtggtttcaaaccacgc
ggcgacaagtccaaggaaggcggcttccgggatggctacaagagcgacggctataaaggc
gaccgctcgaaaggcgacaagtgggacaagccacgtgatttctcccgtggagacgacttc
aagaaagatggcttcaaaaagggcggtaaaaagcctgaaggcggcggttacagcaagaag
cgtcgcggcgagtaa
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