Ochrobactrum sp. EEELCW01: GTN27_05365
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Entry
GTN27_05365 CDS
T07148
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ocl
Ochrobactrum sp. EEELCW01
Pathway
ocl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTN27_05365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocl03019
]
GTN27_05365
03009 Ribosome biogenesis [BR:
ocl03009
]
GTN27_05365
Enzymes [BR:
ocl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GTN27_05365
Messenger RNA biogenesis [BR:
ocl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GTN27_05365
Ribosome biogenesis [BR:
ocl03009
]
Prokaryotic type
rRNA processing factors
GTN27_05365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
zf-CCHC
Motif
Other DBs
NCBI-ProteinID:
QTN02626
LinkDB
All DBs
Position
1:complement(1107296..1110076)
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AA seq
926 aa
AA seq
DB search
MSNKMLIDASHPEETRVIVTRGNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRLALLEAEAKAARAEDDEDEPRAKSERSERSDRND
RSRRNRRRGRRDGQNGDAQANAADKGLPAAEPVGPAFENYVPGTPAMALSQKSDVISEAL
DNGDEDDIEHEEDMVESVGSEDALEELPTPARTNRRQYNIQEVIKRRQILLVQVVKEERG
NKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPQDRKRLKEIVKELEVPQGMGVILR
TAGANRTKAEVKRDYEYLMRLWENVRTLTLQSTAPSLVYEEGSLIKRSIRDLYNKDITEI
LVSGENGYREAKDFMRMLMPSHAKVVQPYREQVPIFTRNGVEAQLDRMLLPQVTLKSGGY
LIINQTEALVAIDVNSGRSTREHSIEDTALQTNLEAAEEVARQLRLRDLAGLIVVDFIDM
EEKRNNRAVEKKMKDCLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTMQVCQHCGGT
GHVRSDSSMALHIIRGIEDYLLRHSGFDINVRTPAASALYVLNHKRQLLADLEGRFGVAI
SIDADESVGHQHFVIDKGAASTRPITQPPVQPMAYIEDDIEDPEIPVDEDEAEEEATADV
QAREDRGDEGDRKRRRRRRRRGGRDRENPEQAAKTDSVSEDASDEDDDADDAQESSSNAS
LSEEDRRKKRRRGRRGGRKNRRDDEPRARKVPDPEFVGYTPVLPVKAEEAVVEAVASVAV
EQAAEVAVPAIEATAEEKPAKTARKPRARKSAKTEEAAEDVVAAVAEEKPAKPARKTRSR
KKVAEEAPAEPVAVADEAEAEAEKPKRRTRRAAAKPAVEVEETVAVEAEVATIAEPQKSA
EPVVTSSESEDQKPKRAGWWQKKGFF
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacaaaatgcttatagatgcctcccacccggaggagacccgggttatcgtcact
cggggcaacaagattgaagaattcgactttgagtcggaacacaagaagcagctgaaaggc
aatatctacctcgcacgcgttacccgcgtcgaaccttcgcttcaggctgcgttcgtggaa
tatggtggcaatcgccatggcttcctcgcattctcggaaatccaccctgactactaccag
atcccggtagcagatcgtcttgcgctgctcgaagcggaagctaaggccgcacgcgccgaa
gacgatgaggacgaaccgcgcgccaagagtgaacgaagcgagcgcagcgaccggaacgat
cgttcgcgccgcaaccgtcgtcgcggtcgtcgtgacggccagaatggcgacgcgcaggcc
aatgcagccgacaagggattgcctgcagccgagcccgtcggcccggcttttgagaattac
gtgcccggcacaccggccatggctctttcgcagaaaagcgatgtgatctccgaagccctc
gataacggcgacgaggacgacatcgaacatgaagaggacatggtcgaatctgttggttcg
gaagatgcacttgaggagcttccgacgcctgcccgtaccaatcgccgccagtacaacatt
caggaagtgatcaagcgtcgccagattcttctggtgcaggtggtcaaggaagagcgcggc
aacaagggcgctgctcttacgacctatctttcgcttgccggacgctattcggttttgatg
ccgaacaccgcgcgtggcggcggcatttcccgcaagatcacccaaccgcaggatcgcaag
cgcctgaaggaaatcgtcaaggaactcgaagtgccgcagggcatgggcgtgatcctgcgt
accgctggcgccaatcgcaccaaggcggaagtcaagcgcgactacgaatatctgatgcgc
ctttgggaaaatgtccgcacgctgaccttgcagtcgacagcaccttccctcgtctatgaa
gaaggcagcctgatcaagcgctcgatccgcgacctttataacaaggacatcacggaaatc
ctcgtttccggcgagaacggctatcgcgaggccaaggacttcatgcgcatgctcatgccg
agccatgccaaggtggtccagccttatcgtgaacaagtgccgattttcacacgcaacggc
gtcgaagcccagctcgaccgcatgctgctgccgcaggtgacgctgaaatcgggcggctat
ctgataatcaaccagaccgaagcgctggttgccatcgatgtcaactccggtcgctcgacg
cgcgaacattccatcgaagacaccgcgctccagaccaatctggaagcagccgaggaagtg
gcgcgccagctgcgcctgcgcgacctggccgggctgatcgtcgtcgacttcatcgacatg
gaagaaaagcgcaacaatcgcgctgtcgaaaagaagatgaaggattgcctgaaggacgac
cgcgcccgcattcaggttggccgcatctcgcatttcggcctactggaaatgtcgcgccag
cgtattcgcgcatcggtgctggaaagcacgatgcaggtgtgccagcattgcggcggcact
ggccatgtccgctcggattcgtcgatggcgctgcatatcattcgcggcatcgaagattat
ctgctgcgtcattcgggctttgacatcaatgttcgcacgccagcggcttcggcgctttat
gtgctgaaccacaagcgtcagttgctggcggatctggaaggccgcttcggcgttgccatc
agcatcgacgccgacgaaagcgtcggccatcagcatttcgttatcgacaagggcgcggcg
tcgacacggcctatcactcagcctccggttcagccgatggcctatattgaagacgatatc
gaagacccggaaatcccggtcgatgaggacgaagccgaagaagaagcgacggctgacgtt
caggctcgcgaagatcgtggtgacgaaggtgatcgcaagcgtcgccgccgtcgtcgtcgt
cgcggcggtcgtgatcgcgagaacccggaacaggctgcaaagaccgattccgtttcggaa
gatgcctccgacgaagacgatgacgccgatgacgcgcaggaatcatcttcgaatgcttcg
ctgagcgaagaagatcgccgcaagaagcgtcgccgcggtcgccggggcggacgcaagaat
cgtcgcgacgacgaaccgcgtgcacgcaaggttccagatccggagttcgtcggttacacg
ccggttctgccggttaaagctgaggaagctgttgtcgaagcagttgcatcggtagcggtg
gaacaagcagctgaagttgctgttccggctattgaagcaacagccgaggaaaagcctgcc
aagactgcccgcaagccccgcgctcgcaagtctgcgaagactgaagaagcggctgaggac
gtcgtagctgctgtagcagaggaaaagcctgccaagcctgcgcgcaagacccgtagccgc
aagaaggttgccgaagaagctcctgctgaaccggtagcggtcgccgatgaggcagaagca
gaagcggagaagccaaagcggcgtacccgcagagctgctgcgaaaccagctgtcgaagtc
gaagagacggtagccgtcgaagcagaagtagcaacgattgccgaaccgcagaaaagcgct
gagcccgttgtgacttcaagcgagagcgaagaccagaagcccaagcgtgctggctggtgg
cagaagaagggtttcttctga
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