Ochrobactrum sp. EEELCW01: GTN27_06000
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Entry
GTN27_06000 CDS
T07148
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ocl
Ochrobactrum sp. EEELCW01
Pathway
ocl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTN27_06000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocl03019
]
GTN27_06000
Enzymes [BR:
ocl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GTN27_06000
Messenger RNA biogenesis [BR:
ocl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GTN27_06000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
Utp25_C
HEM4
ACP_syn_III_C
Motif
Other DBs
NCBI-ProteinID:
QTN04045
LinkDB
All DBs
Position
1:complement(1247526..1248917)
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AA seq
463 aa
AA seq
DB search
MPPKEIELTKEITGGFAALGVTGILLKGVEAAGMTEPKPIQLQAIPHQLEGRDILGIAQT
GSGKTAAFSLPILQKIIGLGDKRRPKTARALILAPTRELAVQIEQTIRNVSKHAHISTAL
VLGGVSKLSQIKRIAPGIDVLIATPGRLTDLMRDGLVDLSQTRWLVLDEADRMLDMGFIN
DVKRIAKATHSDRQTALFSATMPKEIASLAGSLLRDPVRVEVAPQGTTAAEITQVVHPVH
TKEKRRLLSALLGDKAMRSVIVFTRTKHGADAVVRHLERDGYEVAAIHGNKSQNARQRAL
NGFRDGSLRILIATDIAARGIDVPGISHVVNYDLPDEPETYVHRIGRTGRNGASGASITL
YDPAAEESKLRAVERVTRNKLPIKDAPVELAPAPAPRAAAPGERPQKTQHRKGGTAQKPR
RAAPKSGDHRTGGHAAGEAAPKAKRPFRRKRRNANGNGGQRAA
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
gtgccgccgaaagagattgaattgacaaaagaaattacgggcggctttgccgctctcggc
gttaccggcattttgctcaagggcgtcgaagccgctggcatgaccgagccgaagccgatc
cagttgcaggcgattccacaccagcttgaaggccgcgatattcttggtatcgcgcagacg
ggctccggcaagaccgcagctttcagcctgccgatcctgcagaagatcatcggcctcggc
gacaagcgccgtccaaaaactgcacgcgcgctgatcttggcgccaacgcgtgaactcgcc
gtgcaaattgaacagacgatccgcaatgtttccaaacacgcgcatatctcgacagcgctt
gtgttgggcggcgtttccaagctgtcccagatcaagcgcatcgcaccgggcatcgacgtt
ctgatcgccacgcctggtcgtttgaccgatctgatgcgtgacggtctggttgacctctcg
cagacgcgttggctcgtcctcgacgaagcggaccgtatgctggacatgggcttcatcaac
gatgtgaagcgcattgcaaaagcgacgcattctgatcgtcagaccgcgctgttttcggcc
accatgccgaaggaaatcgcgtcgctggcaggaagcttgctgcgtgatccggttcgtgtg
gaagtcgctccgcagggaacgacggctgctgaaatcacgcaggttgtgcatcctgtgcac
accaaggagaagcgccgtcttctttccgcgctgctgggtgacaaggctatgcgttcggtc
atcgtcttcacccgtacgaagcatggtgccgatgcagtcgtccgtcatctggaacgcgat
ggctatgaagtcgccgccattcacggcaacaagtcgcagaatgcacgtcagcgtgcgctg
aacggattccgtgatggatcgctgcggattttgatcgcaacggacattgctgctcgcggc
atcgacgtgccgggtatcagccacgtcgtgaactacgatctgcctgacgagccggaaacc
tatgtgcatcgtattggccgtaccggccgtaatggcgccagcggcgcgtcgatcacgctc
tatgatccggcagcggaagaatccaagctgagagccgttgagcgtgtgacgcgtaacaag
cttccgatcaaggatgcacctgtggagcttgcacctgctccggcaccgcgtgcggcagct
ccgggcgaacgcccgcagaagacccagcatcgcaagggcggaacggcgcagaagccgcgt
cgtgcagccccgaagtcaggcgaccatcgtacaggcggtcacgcagcaggtgaagccgct
ccgaaagcgaagcgtccgttccgccgcaagcgccgcaatgccaacggcaatggcggacag
cgcgcagcgtaa
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