Ochrobactrum sp. EEELCW01: GTN27_07020
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Entry
GTN27_07020 CDS
T07148
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ocl
Ochrobactrum sp. EEELCW01
Pathway
ocl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GTN27_07020 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocl03021
]
GTN27_07020 (rpoB)
03400 DNA repair and recombination proteins [BR:
ocl03400
]
GTN27_07020 (rpoB)
Enzymes [BR:
ocl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GTN27_07020 (rpoB)
Transcription machinery [BR:
ocl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GTN27_07020 (rpoB)
DNA repair and recombination proteins [BR:
ocl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GTN27_07020 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QTN02935
LinkDB
All DBs
Position
1:complement(1457814..1461947)
Genome browser
AA seq
1377 aa
AA seq
DB search
MAQTHSFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVEEPSGGRSDEGLQAVFK
SVFPIQDFSGASMLEFVRYEFDAPKFDVDECRQRDLTYSAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLF
AARVIPYRGSWLDIEFDSKDIVYARIDRRRKLPATTLLMALGMDGEDILSTFYKTVTYTR
DGDNWRIPYSADRFKGMKIISDLIDADTGEVVLEAGKKLTARSAKQLAEKGLKAIKATED
DLFGSYLAEDVVNYATGEIYLEAGDEIDEKVLKTLIDTGETEINVLDIDHINIGGYIRNT
LAVDKNESRQEALFDIYRVMRPGEPPTMDSAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDAEDTVRVLRKEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRVGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKVVDGKVTNDVVYLSAMEEAKHSVAQANVELDERGGFVDEFVICRHAGEVMMAPRENV
DLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEAVVAR
DSGAAIAARRGGVVDQVDATRIVIRATEDLDPSKSGVDIYRLMKFQRSNQNTCINQRPLV
RVGDPIQKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSEKIVSDDVFTSI
HIEEFEVAARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTYGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLADMIDGKVAAAGPKGFKKGSTITRELMTEYPRSQWW
QFAVDDEKLQGELEALRGQYDESKKLLEARFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLG
WACAGMGKKIGELIDVYRKTANIEPLRDTLEHIYPDNDRNEPVRSYDDDSVLMLANQVKR
GVSIATPVFDGAVEADINAMLTDAGLATSGQSTLYDGRTGEPFDRQVTMGYIYMLKLHHL
VDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV
AGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELDDTRDEQQQALPDAAE
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atggctcagacccattcattcaatggtcgcaagcgcgtacgcaaatttttcggcaagatc
ccagaggtcgccgagatgccgaaccttatcgaggttcagaaggcatcttacgaccagttc
cttatggttgaagaaccatccggtgggcgttctgacgagggtttgcaggcggttttcaag
tctgttttcccaattcaggatttctccggcgcttcaatgctcgaattcgttcgctacgaa
ttcgacgcaccaaaattcgacgttgacgaatgccgtcagcgcgatctgacgtattcggcg
ccactcaaggtgacgctgcgtcttatcgtgttcgatattgacgaagataccggcgcgaag
tcgatcaaggacatcaaggagcaggatgtctacatgggcgatatgccgctcatgaccgac
aacggcaccttcatcgtcaatggcacagagcgcgtgatcgtttcgcagatgcaccgttcg
ccgggcgtcttcttcgaccacgacaagggcaagacccattcttcgggcaagctcctgttc
gccgcgcgcgtcatcccttaccgcggttcctggctcgatatcgagttcgattccaaggac
atcgtctacgcacgtatcgaccgccgccgcaagctgccggccaccacgctgctgatggct
ctcggcatggacggcgaagacattctgtcgacgttctacaagactgtcacctatacgcgt
gacggcgacaactggcgcattccgtattcggctgaccgcttcaagggcatgaagatcatc
tccgatctcatcgatgcggacaccggtgaagtcgttcttgaagccggcaagaagctgacc
gcccgttcggccaagcagcttgctgaaaagggcctcaaggccatcaaggcgacggaagac
gatctgttcggttcgtatcttgcggaagatgtcgtcaattacgcaaccggcgagatttat
ctcgaagctggtgacgaaatcgacgagaaggtcctcaagactctgatcgacaccggcgag
acggaaatcaacgtcctcgacatcgatcatatcaacatcggtggctacatccgcaacacg
ctggctgtcgacaagaacgaaagccgtcaggaagccctgttcgacatctatcgcgtcatg
cgtccgggcgaaccgcctacgatggattccgccgaagcgatgttcaactcgctgttcttc
gacgctgagcgctacgacctttcggccgttggtcgcgtcaagatgaacatgcgtctggat
ctcgacgcggaagacaccgtgcgcgttctgcgcaaggaagacatcctggccgtggtcaag
atgctggtggaactgcgcgacggtcgcggcgaaatcgacgacatcgacaatctcggcaac
cgccgtgtgcgttcggtcggcgaactgatggaaaatcagtatcgcgtcggtctgctccgt
atggagcgcgcgatcaaggaacgtatgtcctcgatcgaaatcgacacggtcatgccgcag
gatctgatcaacgcgaagccggctgctgcagccgtgcgcgagttcttcggttcctcgcag
ctgtcgcagttcatggatcagaccaacccgctttcggaaatcacccacaagcgccgtctc
tcggctcttggaccgggcggtctgacccgcgagcgcgctggcttcgaagtccgcgacgtg
catccgacccactatggccgtatctgcccgattgaaacgccggaaggcccgaatatcggt
ctgatcaactcgcttgcaacttttgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgcaaggttgtcgacggcaaggtaacgaacgacgttgtctatctgtcggcgatggaa
gaagccaagcactcggttgcgcaggctaacgtcgagctggacgagcggggcggtttcgtt
gacgaattcgtcatctgccgtcatgcaggcgaagtgatgatggctccgcgtgaaaacgtg
gatctgatggacgtgtcgccgaagcagctcgtttcggttgctgcggctctcatcccgttc
cttgaaaacgacgacgccaaccgcgctctcatgggctcgaacatgcagcgtcaggctgtg
ccgctcgttcgcgctgaagcgccgttcgtcggtacgggcatggaagctgtcgttgcgcgt
gactccggtgccgctattgcagcacgccgtggcggtgtggtcgatcaggttgacgcaacg
cgtatcgttatccgtgcgactgaagatctcgatccgtccaagtcgggcgtcgatatctat
cgcctgatgaagttccagcgttcgaaccagaacacctgcatcaatcagcgtccgctcgta
cgcgttggcgatcccatccagaagggtgacatcatcgctgacggtccgtcgacggatctg
ggcgatctggctctcggccgtaacgtgctcgtcgcgttcatgccgtggaacggctacaac
tacgaagattcgatccttctttccgagaagatcgtttcggacgacgtgttcacttcgatc
catatcgaggaattcgaagtagctgcccgcgacaccaagcttggacctgaggaaatcact
cgcgacattccgaacgtttcggaagaagcgctgaagaatctcgacgaagccggtatcgtg
tacatcggtgccgaagtgcatcctggcgacattcttgtcggcaagatcacgccgaagggt
gaaagcccgatgacgccggaagagaagctcctgcgcgccatcttcggtgaaaaggcatcg
gacgtccgtgacacctccatgcgtatgccgcccggaacctacggtacggttgtggaagtt
cgcgttttcaatcgccacggcgttgaaaaggacgaacgcgccatggctatcgaacgcgag
gaaatcgagcgtctcgccaaggaccgtgacgacgaacaggctatcctggatcgcaacgtc
tatggccgtcttgccgacatgatcgatggcaaggtcgctgcagcgggtccgaagggcttc
aagaagggctcgacgatcacccgtgaactgatgaccgaatatccgcggtcgcagtggtgg
cagtttgctgtcgacgacgagaagctccagggcgaactcgaagctctgcgtggccagtat
gacgaatccaagaagctgctcgaagcacgcttcatggacaaggtcgagaaggtacagcgt
ggcgacgagatgcctccaggcgtcatgaagatggtcaaggtctttgtcgctgtgaagcgc
aagatccagccaggcgacaagatggctggccgtcacggcaacaagggtgtggtttcccgc
attctgccagtcgaggacatgccgttcctcgaagacggtacgcatgccgacatcgtgttg
aacccgcttggcgttccgagccgtatgaatgtgggccagattctggaaacccacctcggc
tgggcatgcgctggcatgggcaagaagatcggtgaactcatcgacgtttatcgcaagacg
gccaatatcgagccgctgcgcgatacactggagcacatctatccggacaacgaccgcaac
gaaccggtccggtcttatgacgacgattccgtcctcatgctggccaaccaggtgaagcgc
ggcgtgtcgatcgcaacgccggtcttcgacggtgcggtggaagccgacatcaacgcgatg
ctgacggatgcgggtcttgcaacgtctggtcagtcgacgctttacgatggccgtacgggt
gagccgttcgaccgtcaggtgaccatgggctacatctatatgttgaagctccaccacctg
gtcgacgacaagatccacgctcgttcgatcggaccttactcgctcgttacgcagcagcct
ctgggcggcaaggcccagttcggtggccagcgcttcggcgaaatggaggtctgggctctg
gaagcatacggtgcggcttacacgctgcaggaaatgctgaccgtcaagtcggacgacgtg
gcaggccgtaccaaggtctacgaagcgatcgtgcgcggcgacgatacgttcgaagcaggc
attccggagagcttcaacgttctcgtaaaggaaatgcgttcgctcggtctcaatgtcgag
ctggacgatacacgcgacgaacagcagcaggccctgcctgacgcagcggaataa
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integrated database retrieval system
