Ochrobactrum sp. EEELCW01: GTN27_07160
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Entry
GTN27_07160 CDS
T07148
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ocl
Ochrobactrum sp. EEELCW01
Pathway
ocl03410
Base excision repair
ocl03430
Mismatch repair
ocl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GTN27_07160 (recJ)
03430 Mismatch repair
GTN27_07160 (recJ)
03440 Homologous recombination
GTN27_07160 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ocl03400
]
GTN27_07160 (recJ)
DNA repair and recombination proteins [BR:
ocl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GTN27_07160 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GTN27_07160 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GTN27_07160 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
CDC45
Motif
Other DBs
NCBI-ProteinID:
QTN02959
LinkDB
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Position
1:complement(1481089..1482873)
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AA seq
594 aa
AA seq
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MTTERFFLGIKQSATGQKWVDRLGLREANTALAIAQHHGISDLVARVLAGRGVSVENAPE
FVDPTLRNLMPDPATLTDMENAASRIADAILRRETVAIFGDYDVDGACSSALMARFLKHY
GIQHSIYIPDRIFEGYGPNPDAMRDLVAKGATLIVTVDCGTNSAPSITAAKQAGADVVVL
DHHQVGGDLPEDAVAIVNPNREDDISQQGHLCAAGVVFLTLAQVTKILRERGKGPGPDLL
SLLDLVALATVCDVVPLTGVNRAFVVKGLVVARSQSNVGLAALARVARIGEPLNVFHLGY
LIGPRINAGGRIGDAGLGARLLTLDDPATADRIAVELDRLNQERQAMEAEMLMEAEAEAS
LEISGGAGASVIVTASDRWHPGIVGLLASRLKEKARRPAFAIAFNANGVGSGSGRSIMGL
DLGKLVRGAVERGLLVKGGGHAMAAGITIERANLGALRAYLEEESAHIVSRLRENQSLSI
DGALAASGATVSLYEALQKAGPYGSAHPQPILALPHHILADVRGVGRDHVRVALRGADGK
RVNAIAFRAAEGDLGRFLFNNIGQSVHVAGNLSLNHWNGSVTPQIQILDAALPV
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacgacagagcgctttttcctcggaataaaacaatccgcaaccggacagaaatgggta
gaccggcttggcctgcgggaggccaatacggcgcttgccattgcgcagcatcacggcatt
tccgatctggttgcacgcgtgcttgccgggcggggggtgtcggtagaaaacgcgccggaa
tttgtcgatccgacgctgcgcaatctcatgcccgacccggcgacgctcacagatatggaa
aatgcggcaagccgtattgccgatgccattctgcgtcgcgagaccgtggccatttttggc
gattacgatgtcgatggggcgtgttcttccgccttgatggcgcgttttctcaaacattac
ggcattcagcactccatctatattcccgaccggatttttgaaggttacggccccaatccc
gatgccatgcgcgatctggtcgccaagggtgcgacccttatcgtcacagtcgattgtggc
accaacagcgcaccgtcgattacagccgccaagcaggctggagcggatgtcgtcgtgctc
gatcaccatcaggtcggcggcgatctgcctgaagatgcggtggctatcgtcaatcccaac
cgggaagacgatatttcgcagcaggggcatctttgcgccgcaggcgtggtctttctgaca
ttggcacaggtgaccaaaatcctgcgtgagcgcggcaagggaccaggccctgatcttctt
tccctgctcgatctggtggcgctggcaacggtttgcgatgtggtgccgttgaccggcgtg
aaccgcgctttcgtcgtcaaaggactggtcgttgctcggtcgcagagcaatgtcggcctt
gcggctttggcgcgcgttgcccgcattggcgaaccgctcaatgtctttcacctcggctat
ctcattgggccgcgcatcaatgctggcgggcgtatcggcgatgcggggcttggcgctcga
ttgctcacgctggatgatcccgcaaccgcggatcgtattgccgtggaacttgaccggctc
aatcaggagcgtcaggccatggaagccgagatgcttatggaggcggaagcggaagcttcg
ctggaaatatccggcggtgcgggcgcatcggtgatcgtgacggcaagtgaccgctggcat
cccggtatcgtcgggttgctggcctcgcggcttaaggaaaaggcccggcggccagccttt
gccattgctttcaacgccaatggtgtcggatcgggttccggtcgctcgatcatggggctt
gatctcggcaagctggtgcggggcgcggtggaacgcgggctgctcgtcaagggtggtggc
catgccatggcggccggtatcaccatcgagcgcgcaaatctcggcgcgttgcgggcttat
cttgaagaagaatcggcgcatatcgtttcgcgcctgcgcgaaaaccagagcctgtccatc
gacggtgcgctggccgcatcgggcgcaacagtgtcgctctacgaagccttgcagaaggct
gggccctatggttctgcgcatccgcagcctatattggcgctgccgcatcatatattggcc
gatgtgcgtggcgtggggcgcgatcatgtgcgtgtcgcgttgcgtggcgcggatggaaag
cgcgtcaatgccatcgccttccgggcggcggaaggcgatctggggcgcttcctgttcaac
aatatcggtcagagcgtccatgtggcaggcaatctgtcactaaatcattggaatggctcg
gtcacgcctcagatacagattctggatgccgctttgcctgtttaa
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