Ochrobactrum sp. EEELCW01: GTN27_08315
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Entry
GTN27_08315 CDS
T07148
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ocl
Ochrobactrum sp. EEELCW01
Pathway
ocl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ocl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GTN27_08315 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocl03021
]
GTN27_08315 (rpoD)
Transcription machinery [BR:
ocl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GTN27_08315 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
DUF5856
DUF4351
Motif
Other DBs
NCBI-ProteinID:
QTN03171
LinkDB
All DBs
Position
1:complement(1728157..1730175)
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AA seq
672 aa
AA seq
DB search
MATKVKENEEAEVEREGAADGPLLDLSDDAVKKMIKLAKKRGYVTMDELNAVLPSEEVTS
EQIEDTMSMLSDMGINVVEDDEQDNDREENNDDDSEEGGDLVESGGTAVATTTTKKEPTD
RTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLTFQAIIIWRDQLN
DSNILLREIIDLETTYAGPEAKQAPVIERVEEEKPRDDKPQRRSRDDDDITNVGGDMPAE
EEEEDEDEANLSLAAMEAELRPQVMETLDLIADTYKKLRKLQDQQVEGRLAATGELSSSQ
ERRYKELKDQLIKAVKSLSLNQNRIEQLVEQLYDINKRLVQNEGKLLRLAESFGVRREEF
LKEYQGHELDPKWVERVSTLSARGWKEFAAKEERAIDRLRSEIQMLATETAISIGEFRRI
VNQVQKGEREATIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY
RRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPE
ELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLR
DTTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHP
SRSRKLRSFLDS
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgaaggttaaggaaaacgaagaagccgaagtcgagcgcgaaggtgctgccgac
ggtccgcttctcgacctttctgacgatgctgtcaagaagatgatcaaactcgcgaagaag
cgcggctacgtcaccatggacgagctgaatgccgtgctgccttccgaggaagtgacatcc
gagcagatcgaagacacgatgtcgatgctttccgatatgggtatcaatgtcgttgaagat
gacgagcaggacaacgaccgcgaagaaaacaacgacgacgactcggaagagggcggcgat
ctggtcgaatccggtggcacggctgttgccaccaccacgaccaagaaagagccgaccgac
cgtaccgacgatccggtgcgcatgtatctgcgcgaaatggggtccgtcgagcttctgtcg
cgcgaaggcgaaatcgcgattgcaaagcgtatcgaggctggtcgcgagaccatgatcgcc
gggctttgcgaaagcccgctgaccttccaggcgatcatcatatggcgcgaccagctgaac
gattccaacattctgctgcgcgaaattatcgacctcgaaaccacctatgccggtccggaa
gccaaacaggctccggtgatcgagcgcgtggaagaggaaaagccgcgcgatgacaagcct
cagcgccgctcgcgtgatgacgacgacattaccaatgtcggcggcgacatgcccgcggaa
gaggaagaagaggacgaggacgaagccaacctgtcgctggcggccatggaagccgaactg
cgtccgcaggtcatggaaacgctcgaccttatcgccgacacctacaagaaactgcgcaag
ctgcaggaccagcaggtcgagggccgtctggccgcgacgggcgaactgtcgtcgagccag
gagcgtcgctacaaggaactgaaagatcagctcatcaaggcagtgaagtcgctgtcactg
aaccagaaccgtatcgaacagctcgtcgaacagctttacgacatcaacaagcgtctggtg
cagaacgaaggcaagctgctgcgtctggccgaatccttcggtgtgcgtcgtgaggaattc
ctgaaggaatatcagggccacgagctggacccgaaatgggtagagcgcgtgagcacgctt
tcagcccgtggctggaaggaatttgcagccaaggaagagcgcgccatcgaccgtctgcgt
tcggaaatccagatgctggcgaccgaaaccgcgatctccatcggcgaattccgccgtatc
gtcaatcaggtgcagaagggcgaacgcgaagcgaccatcgccaagaaggaaatggtggaa
gccaaccttcgtctcgtcatctcgattgccaagaagtacacgaaccgtggtctgcagttc
ctcgatctcattcaggaaggcaatatcggtctgatgaaggcggtcgacaagttcgaatat
cgccgtggttacaagttctcgacctatgcgacatggtggattcgtcaggcaatcacccgt
tcgattgccgatcaggcgcgcaccatccgtattccggtgcacatgatcgaaacgatcaac
aagatcgttcgtacatcgcgccagatgctgcatgaaatcggtcgtgagccgacgccggaa
gaactggctgaaaagctcgccatgccgctcgaaaaagtgcgcaaggtgctgaagatcgcc
aaggagccgatctcgctcgaaacgccggttggcgacgaggaagattcacatctgggcgat
ttcatcgaggacaagaacgcgcttctgccaatcgatgcagcgattcaggctaatctgcgc
gatacgacgacccgtgttctggcttcgctgacgccgcgtgaagaacgtgttctgcgtatg
cgtttcggcatcggtatgaacaccgaccacacgctggaagaagtcggccagcagttctcg
gttacccgcgaacgtatccgccagatcgaggccaaggcgctgcgcaagctgaagcatccg
agccgttcgcgtaagctgcgttcgttcctcgatagctag
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