Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364545
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Entry
139364545 CDS
T10872
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139364545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139364545
03041 Spliceosome [BR:
ocla03041
]
139364545
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139364545
Spliceosome [BR:
ocla03041
]
Complex B
Other components
Prp19-related factors
139364545
Complex C
139364545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
SNAP
TPR_1
Motif
Other DBs
NCBI-GeneID:
139364545
NCBI-ProteinID:
XP_070957456
LinkDB
All DBs
Position
13:complement(32991629..33018626)
Genome browser
AA seq
848 aa
AA seq
DB search
MASLNGKPDVIFEEDDLPYEEEIIRNPYSVKCWMRYIEFKQNGTMSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCIMEPAYEEINNCHERALVFMHKMPRIWLDYCQFLVSQCK
ITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSCGKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVNSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGKDEEEDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDVSEPVQNRVYKSLK
VWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDCYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEE
FGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHSR
DMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMMKATTNATISDLAPGQLGLDDMKLLEQQAQQLAAEAEQDK
PKLKEKILFVRSDTSRSELAELAKQANPDEIDIEDEDGDDEDQGPEEVQLEQKSVPTAVF
GGLKEGED
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctaaatgggaaaccggacgtaatatttgaggaagatgacctgccttatgag
gaggagatcatcaggaatccgtactcggtcaagtgctggatgcgttacatcgagttcaaa
caaaacggcacaatgtccatcctcaacatgatatacgaacgagctctgaaagagctacct
ggcagttacaagttatggtacaactacctgagagagagacggaaacaggtcaaagggaag
tgcatcatggagccagcctacgaggagatcaacaactgccatgaaagagcactggttttc
atgcacaagatgccgaggatatggctggactactgccagttcctggtgtctcagtgtaag
atcaccaggagcagacgcacatttgaccgagcgctccgagcccttcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc
atccgtgtctaccgcaggtacctcaagctgtccccagagaatgcggaggagtacatagat
tacctgcgttcctgcggcaagctggatgaagcagcagtacgtctggcagccgttgtcaac
gatgagagctttgtgtccaaggagggaaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgcttcacagaccagctgggcaaactctggtgctccctggctgactac
tacatccgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctcagagttggggaaagatgaagaagaggacata
gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctgagacagaatccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgtg
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctac
gaggagaacgagcagctagacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggggagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcagagtactttgacgtgtcagagcccgtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg
gtgtacgaccgcatcattgacctgcgcatagccacgccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgtggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gactgctacgggggcaagaagctggagagggcccgggacctgtttgagcaggcgctggat
ggctgtccagccaagttcgccaagactatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcacgccatggcggtgtacgagagagctacgcaggcggtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggtgtc
acctacaccagagcgatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgcctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggcaga
gccatatactcctactgctctcagatctgtgacccaaggatgacggccacgttctggcag
acgtggaaggagtttgagatccgccacgggaacgaagacactatccgggagatgctgaga
atcaagcgcagcgtccaggccacgtacaacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccatctcagaccttgccccgggccagctggggctggat
gatatgaagctgttggagcagcaggcccaacagctggccgccgaggctgaacaggacaaa
cccaaactcaaagagaagatcctcttcgtcaggagtgacacatctcggagtgagctggct
gaactggccaaacaagccaaccccgatgagattgatattgaggatgaggatggtgatgat
gaagaccagggcccagaggaggtgcagctggaacagaaaagtgtccccactgctgtcttt
ggagggctgaaagaaggagaagattga
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