Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364584
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Entry
139364584 CDS
T10872
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04518
Integrin signaling
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139364584
04518 Integrin signaling
139364584
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139364584
09142 Cell motility
04820 Cytoskeleton in muscle cells
139364584
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139364584
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139364584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
139364584
NCBI-ProteinID:
XP_070957549
LinkDB
All DBs
Position
13:complement(35479041..35500374)
Genome browser
AA seq
1449 aa
AA seq
DB search
MFSFVDIRLALLLSATVLLARGQGEDDRTAGSCTLDGQFYNDRDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCPNPVIPHDECCPICPDDGFQEPKVEGPQGDRGAKGEPGPAGFPGND
GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGGMSMPGPMGPMGPRGPPGPPGS
SGPQGFTGPPGEPGEAGSSGPMGPRGPAGPPGKNGDDGESGKPGRPGERGASGPQGARGF
PGTPGLPGIKGHRGFSGLDGAKGESGPAGPKGEGGASGENGAAGAMGPRGLPGERGRAGP
NGAAGARGNDGAAGAAGPPGPTGPAGAPGFPGGPGAKGEVGAQGARGGEGPQGSRGEAGN
PGPAGAAGPAGNNGADGNPGTKGAPGSSGIAGAPGFPGPRGPPGPQGAGGAPGPKGNTGE
VGANGAKGEAGAKGESGPAGVQGPAGPAGEEGKRGGRGEPGGAGARGAPGERGAPGSRGF
PGSDGASGPKGGPGERGGAGVAGAKGNTGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGP
SGAGGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPGGAVGAPGKDGD
VGAPGAPGVAGPSGERGEQGAGGPPGFQGLPGPQGAIGETGKPGEQGLPGEGGAPGSAGS
RGDRGFPGERGAPGPSGPAGARGSPGSAGNDGGKGEAGAAGAPGGQGPPGLQGMPGERGA
GGLPGLKGDRGDQGVKGADGAGGKDGVRGMTGPIGPNGPAGSPGDKGETGAPGPGGPSGA
RGAPGERGESGAPGPAGFAGPPGGDGQPGAKGEAGDNGAKGDGGAQGPAGPTGAPGPQGP
AGNTGAKGARGAAGPPGATGFPGAAGRVGPPGPSGNNGPPGPPGPGGKEGQKGNRGETGP
AGRPGELGAAGPPGAQGEKGQPGGDGPNGPSGTPGPQGIGGQRGIVGLPGQRGERGFPGL
AGQLGEPGKQGPGGPSGERGPPGPMGPPGLAGAPGESGREGTPGNEGSAGRDGAAGPKGE
RGESGAAGASGAPGPPGAPGPVGPAGKSGDRGESGPAGPAGIAGPAGPRGSSGPAGARGD
KGEAGEAGERGMKGHRGFTGMQGPSGPSGPSGESGPAGASGPAGPRGPSGSAGAAGKDGM
SGLPGPIGPPGPRGRSGEMGPSGPPGPPGPPGPPGPPGGGFDMGFIAQPAQEKAPDPFRH
FRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTKKNPARTCRDLKMCHPDWKSGEYW
IDPDQGCTQDAIKVYCNMETGETCVYPTEAEIPKKSWYTSKNIKEKKHVWFGEAMTDGFQ
FEYGSEGSSAQDVNIQLTFLRLMATEASQNITYHCKNSIAYMDQQSGNLKKSLLLQGSNE
IEIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFG
IEVGPVCFL
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcaacagtgcttttggca
agaggacaaggcgaggacgatcgcactgccggcagctgtacgttggacggtcaattctac
aacgacagagatgtctggaaacccgagccatgccagatctgcgtgtgcgatagcggcacc
gtcatgtgcgacgaagttatctgcgaggacacatccgactgccccaatccagtgatcccc
cacgacgaatgctgccccatctgccccgacgacggcttccaggagccaaaggttgaggga
ccccagggtgatcgtggagccaagggagagccaggacctgctggtttccccggcaacgat
ggtattcccggccagcccggccttcctggacccccaggcccccctggaccccctggtctt
ggcggaaacttctcccctcagatgtctggtggttttgatgagaagagcggcggtggcatg
tccatgcccggccccatgggccccatgggtccccgtggtcccccaggacctcctggctca
agtggacctcagggtttcactggcccccctggtgagcctggtgaggctggttcttctggt
cccatgggcccccgtggtcctgctggtccccctggcaagaacggagatgatggtgagtct
ggcaagcctggtcgccccggtgagcgtggagcttccggcccacagggagctcgtggattc
cccggaacccccggccttcccggcatcaagggacacagaggattcagcggtcttgacgga
gctaagggagagtctggccctgctggacccaagggagagggtggtgcatccggtgagaac
ggagccgctggagccatgggaccccgtggtctgcctggtgagagaggccgtgctggtccc
aacggagctgctggtgctcgtggtaacgatggtgctgctggtgctgctggtcctcctggc
cccactggccccgctggtgcacctggtttccccggtggccctggagccaagggagaggtt
ggtgcccagggagctcgtggtggcgagggaccccagggatcccgtggagaggctggtaac
cccggacccgctggcgctgctggccccgctggaaacaacggtgctgacggaaaccccggt
accaagggtgcccctggttcttctggtattgctggtgctcctggcttccctggaccccgt
ggaccccccggaccccagggtgctggtggagctcccggacccaagggtaacactggtgag
gttggtgctaatggagccaaaggagaggctggtgctaagggagagtctggccccgctgga
gtccagggacccgccggccctgctggtgaggaaggcaagcgaggaggccgtggtgagccc
ggtggtgctggtgcccgtggagcccccggcgagcgcggtgcccctggtagccgtggtttc
cctggttctgatggagcttctggccccaagggtggccctggtgagcgtggtggcgccgga
gttgctggagctaagggtaacactggtgagcctggccgcaacggcgagcctggtatgcct
ggatccaagggtatgactggtagccctggcagccccggtcccgatggcaagactggcccc
tctggtgccggtggtcaagatggtcgccccggacctcccggccccgttggagccagaggc
cagcccggagtcatgggattccccggacctaagggagccgcaggtgagggtggcaagcct
ggtgagagaggagtcatgggacccggtggtgctgttggtgctcccggcaaggatggtgat
gttggtgctcctggtgctcccggtgttgccggaccttctggagaacgaggcgagcaggga
gccggtggcccccctggattccagggacttccaggaccccaaggcgctattggtgagact
ggaaagcccggagagcagggtcttcccggtgagggtggtgcccctggttccgctggatcc
agaggtgacagaggtttccccggtgagcgtggtgcccctggcccatctggacccgctggt
gcccgtggctctccaggctctgctggtaacgatggtggtaagggagaggctggtgccgca
ggtgcccccggtggccaaggaccccctggcctgcagggaatgcccggagagcgtggtgct
ggtggtctgccaggcctgaagggagacagaggtgaccaaggagtcaagggtgctgatggt
gccggtggtaaggatggcgtccgtggtatgactggccccattggacccaacggccctgct
ggatctcctggtgacaagggagagactggcgctcctgggcctggtggaccttctggtgcc
cgtggtgcacctggtgagcgcggtgagtctggcgcccctggacccgctggattcgctggg
cctcctggtggtgacggtcagcctggtgctaagggagaggctggagataacggtgccaag
ggtgacggtggtgctcagggacccgctggacctacaggagcccctggacctcagggtccc
gctggaaacaccggagctaagggcgcccgtggtgctgctggtccccctggtgccactggt
ttccccggtgctgctggtagagttggacctcctggcccatctggcaacaacggacctccc
ggacccccaggccctggtggaaaggaaggacagaagggtaaccgtggtgagactggcccc
gccggtcgtcctggtgagctcggcgctgccggaccccctggtgcccagggagagaaggga
cagcctggtggagatggtcccaatggaccctctggaactcccggacctcagggtatcggt
ggacagcgtggtattgttggtctgcccggacagagaggcgagcgcggtttccccggcctc
gccggacaactgggagagcctggcaagcagggacctggtggcccctctggtgagcgtgga
ccccccggacccatgggaccccctggactggctggagcacctggtgagtctggtcgcgag
ggaactcctggtaacgagggatctgctggtcgcgatggtgctgctggacccaagggagag
cgtggtgagtctggtgccgctggtgcttccggtgcccccggaccccctggtgcccctgga
cccgtcggccctgctggaaagtctggtgaccgtggagagtctggtcctgctggccccgct
gggattgctggccctgctggtccccgtggctcatcaggacccgctggagctcgtggagac
aagggagaggctggcgaggctggagagagaggcatgaagggacatagaggattcactggc
atgcagggaccctctggcccctctggaccatctggagagtcaggacctgctggagcctct
ggccccgctggacctagaggaccttctggatctgctggtgccgccggtaaggatggtatg
agcggtctgcccggccccatcggacctcccggacctcgtggtcgctctggagagatggga
ccctctggaccccctggccctcccggtccccctggcccccccggacctcccggcggtgga
ttcgacatgggcttcattgctcagcccgctcaggagaaggcccccgatcccttccgtcac
ttccgcgccgacgacgccaacgtgatgcgcgaccgcgacctggaggttgacaccactctc
aagagcctgagccagcagattgagaacatccgctctcccgagggcaccaagaagaacccc
gcccgcacctgcagagacctgaagatgtgccaccccgactggaagagcggcgagtactgg
atcgaccccgaccagggctgcacccaggacgccatcaaggtgtactgcaacatggagacc
ggcgagacctgcgtctaccccaccgaggcagaaatccccaagaagagctggtacaccagc
aagaacatcaaggagaagaagcacgtctggttcggcgaggcaatgaccgatggcttccag
ttcgagtatggcagcgagggttccagcgctcaggatgttaacatccagctgaccttcctg
cgccttatggccactgaggccagccagaacatcacataccactgcaagaacagcatcgcc
tacatggaccagcagtccggcaacctcaagaagtccctgctgctccagggctccaacgag
atcgagatcagagccgagggcaacagccgcttcacatacagcgtcaccgaggacggctgc
acgtcgcacaccggtgcatggggcaagacagtcatcgactacaagacaacgaaaacatcc
cgtctgcctattattgacatcgctcctatggacgttggtgcacccaatcaggaatttggc
attgaagttggcccagtctgcttcttgtaa
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