Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364602
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Entry
139364602 CDS
T10872
Name
(RefSeq) protein CASC3-like
KO
K14323
protein CASC3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139364602
09122 Translation
03013 Nucleocytoplasmic transport
139364602
03015 mRNA surveillance pathway
139364602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139364602
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139364602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
139364602
NCBI-ProteinID:
XP_070957582
LinkDB
All DBs
Position
13:36480716..36494109
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AA seq
775 aa
AA seq
DB search
MADRRRRRRRASQDSEEDDESGSGSESGKSLSPTTKPRVRDPEPVEAPAVRVVPENDAES
ECESEDGVGEAVLSDYESADPEENGSHSEGGEEEEEEEVPPPAAGPKPTPASDTPAAEGE
LQEGGGKDGEGEKSMRKEVKCEDKGNLAGERQSGDGQESTEDSENKGVKPGQKLDDDQDR
NNPAYIPRKGMFFEHDVRGNAQEEERPKGRNRKLWKDEGRWEHDRFREEEQAPKSREELV
AIYGYDIRNGGVSNERSYRQRKPRHSTSPVRDKRWQDGDWERPVHTSWQQGGNPNSRSAP
PAVALQQSGPPPSAAPNTQRSNNPPRPSSHPPPRGFQGNRPPQAHHRNDRNQESQRPGPK
AHLAEPLQTRSLPPMDGEQGPRGRGNRGAHTERSPSVVVEEVRSEEDDERNTTTVTTSQS
VYYSRHYSGKGDRERDSAPPPRRQEQQRGGSAPPADNQVTRDASPAPERPVEKKSYSLAR
RTRTRATELGKQASLEEPASTVSSSALKSEPWHGPGQSQGDAGDSSQGTVLAGLDQDLTR
LSLAGPNWPQNPSSYLRAEMRGIPSSIHMGGAPPQYSNIEELGAGNRAKRYSSQRQRPSP
EPAPPMHIGVMEGHYYEPMSYQGPIYSHGDSPAPLPPQGILVQPEMHLPHPGHPGLHPHQ
SSGPMPNPALYAAPPVSMSPGQPPPQQLLAPPFYPPPGVMTFGNTNYPYPAGATLPPMYN
PPAQSQVYGQSQVYGGVTYYDPMQQQAQPKPSPPRRSSQPVTVKPPPPEVGYGPE
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcgacgtcgaaggaggcgcgcatcccaggacagcgaggaggacgatgaa
tctggttcgggatcagaaagtggaaagtccctttcgccaacgacaaagccccgagtacgg
gaccctgaaccagtagaggcaccagctgttcgtgtggtgccggaaaacgatgctgaatcc
gagtgtgaaagtgaagatggtgtaggagaagctgtcctttctgactatgaaagcgcagat
cctgaggagaatggctcccattcagagggaggtgaggaggaggaggaggaagaggtccct
ccaccggctgctgggcccaaacccactcctgcttccgacacccctgctgcagagggggag
ctgcaggagggagggggaaaggatggggagggtgagaaaagtatgaggaaagaagtgaag
tgtgaagacaaaggcaacctggcaggggagcggcaaagcggagatggacaggaaagcaca
gaagactctgagaataaaggcgttaaaccaggccagaagctggatgatgaccaggatcgt
aataacccagcctatatcccccgtaagggaatgttctttgagcacgacgtcagaggaaat
gcacaggaggaggaacggcctaagggtcgtaacaggaagctgtggaaggatgagggtcgc
tgggaacacgataggttcagggaggaggagcaggcgcccaagtcacgtgaggagctggtt
gcgatctatggctatgacatccgcaacggaggtgtctccaatgagcggtcctatagacag
cgcaagcccagacacagcacctctccagtccgggacaagcgctggcaggacggagactgg
gagaggcctgtccatacctcctggcagcaaggagggaaccccaacagccgtagcgccccc
ccagccgtggccctgcagcagtctggtcctcccccctcagcagccccaaacacccagcgc
agcaacaacccccccaggccctcctcccacccccctccccggggcttccagggcaaccgc
cctccccaggcacaccacaggaatgaccgaaaccaggagtcccaacggccaggccccaag
gcccacctcgccgagcccctccagacccggagtttaccgcccatggacggggaacaaggc
cccaggggccgggggaacagaggggcccatacagagcgcagcccttcggtcgtggtggaa
gaggtccgcagcgaggaggatgacgagcgcaacacaactacagtgacaacgtcacagtcc
gtgtactacagtcgccactacagtggcaagggagatcgcgaaagggactctgcgccaccg
ccacgacgacaggagcagcagcgagggggatctgctcctccggcagacaaccaggttacc
cgcgatgcctccccggctccagagcgccccgtggagaagaagtcgtattccctagccagg
agaactcgcacccgggccactgagctgggcaagcaggcctctcttgaggagcctgcctcc
accgtctcttcctcggccctgaagagtgagccgtggcatggccccggtcagagtcagggg
gatgctggagacagcagccaggggacagtactcgcagggttggaccaggacctgaccaga
ctcagcctggccggaccgaactggccccagaacccatcttcatatctacgcgctgagatg
aggggcatccctagctctatacacatgggtggagcacctccacaatacagtaacatagaa
gagctgggagctggtaaccgggcaaagcggtactcgtcccagcgccagaggccaagcccg
gagcccgctcctcctatgcacataggggtcatggagggccactactacgagcccatgtct
taccaaggaccaatctattcccacggcgacagccccgcccccctcccaccccagggcatt
ctggtccagcctgagatgcacctcccccacccaggacacccaggtctacacccccaccag
tcgagcggccccatgcccaacccggctctctacgctgctccccctgtctccatgtcccct
ggacagccccctccacagcagctgttggccccgccattctaccctccgccaggtgtcatg
acctttgggaacaccaactacccctacccggcaggagccaccctgccccccatgtacaac
cccccggcccagtcgcaggtgtacggccagtcgcaggtgtacggtggggtgacgtactac
gacccgatgcagcagcaagcccagcccaaaccctcgcctccccggcgttcctcccagccc
gtcaccgtcaaacctcccccaccagaggtagggtacggcccggagtga
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