Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364813
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Entry
139364813 CDS
T10872
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like isoform X1
KO
K11651
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139364813
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139364813
PBAF complex
139364813
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
GCN5L1
Sarcoglycan_2
Motif
Other DBs
NCBI-GeneID:
139364813
NCBI-ProteinID:
XP_070958030
LinkDB
All DBs
Position
13:43584641..43593206
Genome browser
AA seq
437 aa
AA seq
DB search
MSKRPSYAPPPTPAPTTQVPNTPGFVGYNPYSHLAYNNYRLGGNTGSNNRVMNSSGITVP
KPPKPPDKPLMPYMRYSRKVSRKVWDQVKASNPDLKLWEIGKIIGGMWRDLTEEEKQDYL
NEYEAEKIEYNDSLKAYHNSPAYLAYINAKNRAEAALEEESRQRQTRVEKGEPYMSIQPA
EDPDDYDDGFSMKHTATARFQRNHRLISDILSEIVVPDVRSVVTTARMQVLKRQVQSLMV
HQRKLEAELLQIEDRHQDKKRRFLETTDSFNSELKRLCGQKVEVDMEKLAAEIAAAEEAA
RRRAEEREKEVAEQAEKTAQEQQEQQQAAAASASSTLPITEQNNTTPPTTETKEDQDKPT
PMETEETPTSETSETHPEAEEGTPAAEKQQGPPVESVTDEGTSDSTAPSESSTGPPADPP
ASAEPTPEERPASQPSQ
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaggccatcatatgcacctccccccaccccagcccccacaactcaagtgccc
aacacccctgggtttgtggggtacaacccatacagccatctggcctacaacaactacagg
ctgggagggaataccggcagcaacaacagggtaatgaattcctcaggaatcactgttccc
aagccgcccaaaccgccagacaagccgctgatgccctacatgcggtacagccggaaggta
agcaggaaggtctgggaccaagtcaaagcctccaatccggatctgaagttatgggagatt
ggaaagattattggtggcatgtggagggacctcactgaagaggagaagcaggactacttg
aacgaatatgaagcggaaaagattgagtacaacgactccctgaaggcctaccacaactca
ccggcttacctggcctacatcaacgccaagaaccgtgcagaggcagctctggaggaggag
agcagacagcggcagacccgtgttgagaagggagaaccttacatgagcatccagcctgct
gaagacccagatgactatgatgatgggttctccatgaagcacacggccaccgctcgcttc
cagaggaaccaccggctcatcagtgacatcctcagtgagatagtggtgccagatgtgcgc
tctgtcgtcaccactgcacgcatgcaagtcctcaagcgccaggtccagtccctcatggtg
caccagaggaagctggaagcagagctgctgcaaatagaggatcggcaccaggacaagaag
aggaggttcctggagactacagactccttcaatagtgagctcaaacggctatgcggtcag
aaggtggaggtagacatggagaagcttgcagcagagattgctgcggcagaggaggctgct
aggcggcgggcggaggagagggagaaggaagtggcggagcaggcagagaagactgcccag
gaacagcaagagcagcagcaggcggcagcggcctccgcttcgtctaccctgcccatcact
gaacagaacaacaccaccccaccaaccacagagaccaaggaggaccaggacaagccaacc
cctatggagacagaagagactcctacatcagagacatctgagacccatcctgaggctgag
gagggcacacctgctgcagagaagcagcagggtccgccggtggagagcgtcacggacgag
ggcactagtgacagcaccgccccatctgaaagcagcaccggaccccctgcagacccccct
gcttcagctgagcctaccccagaggaacgcccagccagccagccctcccaatag
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