Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364867
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Entry
139364867 CDS
T10872
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139364867
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139364867
PBAF complex
139364867
GBAF(ncBAF) complex
139364867
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139364867
NCBI-ProteinID:
XP_070958134
LinkDB
All DBs
Position
2:25052153..25071919
Genome browser
AA seq
1095 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGLMGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVHDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSTSDVEGDVEDPPISEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEEEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNPKKDSENTPVKGGAVADLDDLEDDSVVSGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMINFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTEPAETEKVDT
DSDSQQPDKAESKDEAEKPSESAEKLAEGQKVKSETAEPSEREEGESEGGEGTASADKDK
EEAMETSEEDKEEQGAMGKEEEERKKLEPDGGEGNIATAAAAALASAATKAKHLAAVEER
KIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKYA
EMKARQQMEQQQANTVAQGPAPHHGPPGPGMHHGPSHHGPPPAMHSGHGPPGPGFHPMGP
HHPQQTGPMGGPGQPMPGRMMPGGPPTGSMPPMMGPRHPGAPNGMYPGPSPVHADGMPPA
SVGPQAAAPARVADS
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggaccagcagccggcctt
atgggcgtcggtactgcggtgggccgtaagaaggatggaggtccttcctcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtccaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcggacggagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcagggggtgctctgtgtcacatcctgggc
tctacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggataggaatgtagagatgttcttgaatgtagagaagaccctggttcagaataac
tgcctgactcgaccaaccgtattcctggtgcatgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcactgaggacaagtctaaggccacc
catcatatctacccctctccaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagtgacgtggaaggggatgtggaggacccacccatctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacactgacgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttccctaag
gaggaggagtcttcccgtacacccgatcgtaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtctcgcaagaagggtggc
aagaaggggaatcctgggtctcactggaagcgtcgtggccaccgtggcgaggaggaggag
gaggaagaggacctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaaccctaagaaagatagcgagaacaccccagtgaaggga
ggggccgtggctgacttggatgatctggaggatgactctgtggtctccggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgctgcctggttcgactacaactgt
atccatgagattgagaggcgtgcactgccagagttcttcaacggcaagaacaagtccaag
tccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctaaccggagacgtgtgtgccgtc
atgagggtgcatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccggcccctccccatgggccccccgcccaccccccacttcaacgtgctggctgacacc
ccctctggcctgacgccaatgcaccaccgccccccacagatcccctccggccagcagatg
atcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcttgcgt
aacgacctctactctaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccttacctggagaactctgagtcgtccctgggccccctggcctac
cagcccgtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tccgtggtggatccccgtgtggcctctgccgccgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcaggag
gcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagcggcatcgca
ggaaccgcccccgaggagcccgagaagaccgagccagcagagaccgagaaggtggacaca
gactccgactcccagcagcctgacaaggctgagtctaaggacgaggcggagaagcccagt
gagtctgctgagaagctggccgagggacagaaggtgaagagcgagacagccgaaccgtct
gaacgggaggagggagagagtgagggaggagagggcacggcttcagcagacaaagacaag
gaggaggccatggagacctcagaggaggacaaagaggagcaaggagcgatgggaaaggag
gaagaggagaggaagaagctagagccggacgggggggaggggaacattgccactgcagcc
gccgctgccctcgcctcagctgccaccaaggccaagcacctggcagcagtggaggagagg
aagatcaagtctctggtagctctgctggtggagactcagatgaagaagctggagatcaag
cttagacactttgaggagctggagaccatcatggaccgagagaaagaggctttggagttg
cagaggcagcagctgctgacggagcgccaggccttccacatggagcagctgaagtatgct
gagatgaaggcccgccagcagatggagcagcagcaggccaacacagtggcccagggcccc
gcaccccaccatggtcccccagggccaggcatgcaccacggaccctcccaccacggaccc
cctcccgccatgcactccggacacggccctcccggacccgggtttcaccccatgggtccc
caccacccgcaacagaccggaccaatgggagggcccggtcaacccatgccaggacgcatg
atgcctggcggcccccccactggcagcatgcctcccatgatgggtccccgccaccctgga
gcccccaacggcatgtaccctggcccctcgcctgtacatgctgatggtatgcccccagca
tctgtgggacctcaagcggcagccccagcacgagttgctgacagctaa
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integrated database retrieval system
