Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364926
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Entry
139364926 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase SMURF2-like
KO
K04678
E3 ubiquitin ligase SMURF1/2 [EC:
2.3.2.26
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
ocla04137
Mitophagy - animal
ocla04144
Endocytosis
ocla04340
Hedgehog signaling pathway
ocla04350
TGF-beta signaling pathway
ocla04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139364926
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
139364926
04350 TGF-beta signaling pathway
139364926
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139364926
04137 Mitophagy - animal
139364926
09144 Cellular community - eukaryotes
04520 Adherens junction
139364926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139364926
04121 Ubiquitin system [BR:
ocla04121
]
139364926
03029 Mitochondrial biogenesis [BR:
ocla03029
]
139364926
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
139364926
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
139364926
Autophagy
Mitophagy
Other mitophagy associated proteins
139364926
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
HECT type E3
139364926
Mitochondrial biogenesis [BR:
ocla03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
139364926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
WW
C2
Motif
Other DBs
NCBI-GeneID:
139364926
NCBI-ProteinID:
XP_070958265
LinkDB
All DBs
Position
13:47314510..47369306
Genome browser
AA seq
772 aa
AA seq
DB search
MSNQGVRRTGPVKLRLTVLCAKNLVKKDFFRLPDPFAKVVVDGSGQCHSTDTVKNTLDPK
WNQHYDLYIGKSDSITISVWNHKKIHKKQGAGFLGCVRLLSNAINRLKDTGYQRLDMNKL
GLNDSDTVRGQIVVSLQSRDRIGTGGPVVDCSRLFDNDLPDGWEERRTASGRIQYLNHIT
RTTQWERPTRPASEYSSPGRPLSCIVDENTPILSTNGATPTIPCIPSSDQRAQERRVRSQ
RHRNYMSRTHLHTPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNVNCEEL
GPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLSANLHLVLNPSPNGSRSGIEIQNSPI
SRQIQLKEQAQQALVSPGNLPEEAECLTVPKYKRDLVQKLKILRQELSQQQPQAGHCRIE
VSREEIFEESYRQVMKMRPKDLWKRLMVKFKGEEGLDYGGVAREWLYLLSHEMLNPYYGL
FQYSRDDIYTLQINPDSAVNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKP
ITLDDMESVDPDLHNSLVWILDNDITGVLDHTFCVEHNAYGEIIQHELKPNGKIIQVTQD
TKKEYVRLYVNWRFLRGIEAQFLALQKGFNEVISQHLLKAFDEKELELIVCGLGKIDIND
WKSNTRLKHCTPDTNIVKWFWKAVESYDEERRARLLQFVTGSSRVPLQGFKALQGAAGPR
LFTIHQIDASSNNLPKAHTCFNRIDIPPYENYDKLYDKLLTAIEETCGFAVE
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaaggagttcggcgaactggtccggttaaactgcgtttaacagtcctctgc
gccaaaaacctggtgaagaaagatttctttcgcctccctgatccctttgccaaagtggtg
gtggacggctcaggacaatgtcactccacagacaccgtgaagaacaccctcgaccccaag
tggaaccagcactacgacctatatattggaaagtctgactccatcaccatcagcgtgtgg
aaccacaagaagatccataagaagcagggggctggcttcctgggctgtgtacgccttcta
tccaacgccatcaaccgcctcaaagacactggctatcagagattggacatgaacaagctg
ggcctcaatgacagtgacacagtgaggggtcagatagtggtgagcctgcagtccagagac
aggataggcacaggaggcccagtggtggactgcagccgtctgtttgacaatgacctgcca
gacggctgggaggagcggaggactgcgtctggccgaatccagtacttgaaccacatcaca
cgcaccacacagtgggagaggcctaccaggcctgcgtcggagtactccagcccaggccgg
cctctcagctgcattgtggatgagaacacgcccatcctgagcaccaacggggccacgccc
accattccgtgtatcccgtccagtgaccagcgggcccaggagagacgcgtccgctcccag
agacacaggaactacatgagcaggacacacctccacacacccccagatctgcccgaggga
tacgagcagaggaccacgcagcagggccaggtctacttcctccacacccagacaggagtc
agcacatggcacgaccctcgagtgcccagagacctgagtaatgtaaactgtgaggagctg
ggcccactgccccctggctgggagatcaggaacacagccaccggccgggtctactttgtg
gaccataacaaccgcaccacgcagttcacagacccgcgcctctccgccaacctgcatcta
gtccttaacccaagccccaatggttcccgcagcggcatcgaaattcagaacagtccgatc
agccgtcagatccagctgaaggagcaggcccagcaggcactagtgtctccaggtaatctg
ccagaggaggccgagtgcctcacggtgcccaagtacaaaagggacctggtgcagaagctg
aagatcctccgccaggagctgtcccagcagcagccccaggcaggccactgtcgcatagag
gtgtcccgcgaggagatctttgaggagtcttaccgccaggtgatgaagatgaggccgaag
gacctgtggaagagactgatggtgaagtttaaaggggaggaggggctggactacggagga
gtagccagggagtggctgtatctgctgtcccatgagatgctgaatccgtactacggcctg
ttccagtactcccgcgatgacatctacaccctgcagattaaccccgactcggccgtcaac
ccggagcacctgtcctacttccactttgtgggtcgtattatgggcatggcggtgttccac
ggccactacatagacgggggcttcaccctgcccttctacaaacagctgctggggaaaccc
atcacactggacgacatggagtcagtggacccagacctccacaacagcctggtctggatc
ctggacaatgacatcacaggcgtgttggaccacaccttctgtgtggagcacaatgcctac
ggggagatcatccagcacgaactcaaacccaacggcaaaatcatccaggtcacccaggac
accaagaaggagtatgtcaggctgtatgtgaactggcgtttcctgcgaggcatcgaggct
cagttcctggccctgcagaagggcttcaacgaggtcatatcacagcacctccttaaggcc
ttcgacgagaaagagctggagctcatagtgtgtggcctgggtaagatcgacatcaacgac
tggaagtccaacacgcggctgaagcactgcacccctgacaccaacatcgtcaagtggttc
tggaaggccgtggagtcatacgatgaggagcgccgggccaggttgctgcagtttgttacc
ggctcttccagggtccccctgcaaggcttcaaagccctccaaggtgctgcaggcccacga
ctcttcactatccaccagatcgatgccagctccaacaacctgcccaaagcccacacctgc
ttcaaccggatcgacattcctccctacgagaactatgacaagctgtatgacaagctgctg
actgctatcgaggagacgtgtggctttgctgtggagtga
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