Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139364927
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Entry
139364927 CDS
T10872
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139364927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139364927
03009 Ribosome biogenesis [BR:
ocla03009
]
139364927
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139364927
Spliceosome [BR:
ocla03041
]
Complex A
U1 snRNP components
U1 related factors
139364927
Complex B
139364927
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
Helicases
139364927
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139364927
NCBI-ProteinID:
XP_070958266
LinkDB
All DBs
Position
13:47377281..47382818
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AA seq
616 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGGKFGNPGDRLRKKHWNLDELSKFEKNF
YQEHPDVNRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPT
PIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTN
MRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEIT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRG
GHSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGAS
GFDKSGNGFSGYGSNGQSNYGTSQAGAFPTQNFQAPQFSANQGGAQNGMSHQQFPFTQQQ
APQPMVPYPMPPQFPQ
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagtggaccacct
cgttttggaggcggcggaagaggaggaggtggtggtggggggaagtttggtaatcccggt
gatagactgcgcaagaagcattggaaccttgacgaactctctaaatttgaaaagaacttc
taccaagaacacccggatgttaatcggagatctccgcaagaggttgcacagtacagaagt
actaaagctgttactgtgaaggggagggactgccctaatccaattatgaagttccatgaa
gccagttttccaacatacgtgatggatgtcattaacaaagcaggctggtcagaaccaaca
ccgatccaagcacagggttggccactggcattgagtggcaaggacatggttggcattgca
cagacaggctctgggaaaactctctcttacttgttgcctgcaatcgtgcacattaaccac
cagcctttcctggaacgtggagatggccctatttgcttagtgcttgcccctacccgtgag
ctggctcagcaggtccagcaggtggcggcagagtatggcagagcttctcgcctgaagtct
gtctgcgtttatggtggtgcgcccaaagggccacagctccgtgacctggatagaggtgtg
gagatttgcattgccacacctggcaggcttattgacttcctggaggcgggaaagacgaac
atgcgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttc
gaaccacaaatccgaaagattgtggaccaaatcagacctgaccgacagacgctgatgtgg
agtgctacctggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtc
cagatcaatgtaggagctctgcagctgagtgccaaccacaacatcttacagatcgtggat
gtttgcaatgatggcgagaaggaagacaagctcctccgcctacttgaggagatcatgagt
gagaaggagaacaagaccatcatctttacagagaccaagaggcgatgtgatgagatcact
aggaggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcag
gagagggactgggtgctcaatgagttcaagtttggaaaggcgccaattctcattgccaca
gacgtcgcctccaggggtctagatgttgaagatgtgaaatttgtcatcaactttgactac
cccaacaactctgaggactatattcaccgcatcggcagaactgcccggagccaaaagact
ggcacagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgct
gtgctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagagga
ggtcattcaaggggaggcagaggtggtagtggatttagggatgatcgccgggacaggtac
tcctccgggggcaggcgtgacttcagtagctttagggacagggaaaacgatagaggtttt
gacagtggaccaaagaaggtatttggcacaaattcacagagtggaggctatggggcaagt
ggctttgacaaaagcggcaatggttttagtggctacggcagcaacggccagtcaaactat
ggtaccagccaggccggggcgttcccaacgcagaacttccaggccccacagtttagtgcc
aaccaaggaggtgcacagaatggcatgagccatcaacagttccccttcacgcagcagcaa
gcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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