Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365087
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Entry
139365087 CDS
T10872
Name
(RefSeq) general transcription factor IIF subunit 1-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139365087
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139365087
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
139365087
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
139365087
NCBI-ProteinID:
XP_070958562
LinkDB
All DBs
Position
13:complement(54037556..54050656)
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AA seq
540 aa
AA seq
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MASLGGSSSSSTEYIVRVPKNTSKKYSIMAFNSGDKVNCSSWTQARMERDMSNRRMYGVE
ETEEGAAGSEFGKKQREEARRKKFGIVTREFKVEDQPWILKVNGKAGKRFKGTKKGGITE
NASYYIFTQCPDGAFEAFPVNGWYNFVPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQR
RLREQERGPDDDDEEGEKGGKKKKKKGGRGGDLRIHDLEDDLELSSDESDSSGGEDGDSK
PKKKEGDVKGKGKKKKKKKRGSDSEANEDSDDGDFEGLEVDYMSDESSSEEEVGEEKAKS
NKEAVPKGIDEASESEEESEEEKQNEEEGKEEEEEEEGKKTPVQTKKKRDSSGESDTSED
SDIDGEAASALFMVKKRTPPKRGGGRGSGGSSRTGSRPGTPSIDSASTSNTLRAAASKLE
QGKRQVVGGSSESPAAKRLKMESSSTAVTTQSPAPSGKSTPQPPSGKSTPSSSDVQLTEE
AVRRYLIRKPMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKRLNPERKNVNDKMHFYLTE
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcattgggtggcagcagttcctcttctacagagtacatagtccgagtccccaag
aacaccagtaagaagtacagcatcatggcctttaactctggggacaaagtaaactgctcc
tcctggacccaggcgcgtatggagcgggacatgagtaacaggaggatgtatggtgtggag
gagactgaggagggggcggcaggcagtgagtttgggaagaagcagagggaggaggcacgc
aggaagaagtttggaattgtcaccagggagttcaaggtggaggaccaaccctggatcctc
aaggtcaacggcaaggcagggaagaggttcaagggtacgaagaaagggggcataacggag
aatgcgtcctactacatctttacccagtgtcccgacggggcctttgaggccttccccgtc
aacggttggtacaacttcgtgccccaggccaaacaccgcacgctgaccgccgaggaggca
gaggaggagtggggcaggaggaacaaggtggtgaaccacttcagcatcatgctccagagg
cgcctgcgggagcaggagagagggccggacgatgacgacgaggagggcgagaaggggggg
aagaagaaaaagaagaagggaggaagaggaggggacctgcgcatccatgacctggaggat
gacctggagctgagcagtgatgagagtgacagcagtggaggagaagatggagacagcaag
cccaagaagaaagagggggatgtgaaggggaaggggaagaagaagaagaagaagaagagg
ggcagtgacagcgaggcgaatgaggacagtgacgatggagactttgagggcctggaagtc
gactacatgtcagatgagagcagttcagaggaagaggtcggcgaagagaaggccaagtcc
aataaagaggccgttcccaaaggaatcgacgaggcatcggagagtgaggaagagagcgag
gaggagaaacagaacgaggaagaggggaaagaggaggaggaggaagaggaagggaagaag
accccagtccagacgaagaagaagagagacagcagcggtgagtcggacacttcggaggac
agcgacatcgatggagaggcagcctccgctctcttcatggtgaagaagcgtactcctcct
aagcgcggtggtgggcgtggctctggaggcagctccaggactggcagtcgccctggaaca
ccgtccatagactccgcctccacctccaacacactccgagccgccgctagcaaactggag
caaggtaagagacaggtggtgggtggtagctctgagtctccagctgccaagaggctgaag
atggagtccagcagtacggctgtcaccacccagagtcctgccccctcagggaagagcacg
ccacagcccccctcaggcaaatcaacccccagttccagtgacgttcagctgacggaggag
gcggtgcgtcgctacctgatccggaagcccatgaccaccaaggacctgctgaagaagttc
cagaccaagaggactggcctgagcagcgagcagacggtcaacgtcctggcccagatcctc
aaacgcctcaaccctgagaggaagaacgtcaacgacaagatgcacttctacctcacagag
taa
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