Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365117
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Entry
139365117 CDS
T10872
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139365117
03036 Chromosome and associated proteins [BR:
ocla03036
]
139365117
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139365117
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
139365117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
THOC7
Motif
Other DBs
NCBI-GeneID:
139365117
NCBI-ProteinID:
XP_070958614
LinkDB
All DBs
Position
13:55366969..55459477
Genome browser
AA seq
1949 aa
AA seq
DB search
MEEKKKRKQEEKKKKEAAQKKVTEQKTKVPDSAKPGPTPPPPANPSATPSVPPTSSSGSN
GKRAPSSAQQQSQPSPAQQRYPPREIPPRFRQQEHKQLLKRGQPLPPGTLPTVPGRPEPD
SSQKSSGASHTELPPQSGPGAHYENPHWGHQPANRSATSASASANHSGWDTVIIDESDTE
AWPSISRSSQSQGPAGGCPSDTDPASSSSSSMSMATGANGQIGHFPANYPSSKGASSGPG
SSANHPGAGTVGMASSQGAANRGWGSGPGPSPHGPPQSSSVGGGEGKSDGPMGGGGGRGW
GSSSSTTSNLNLNPNANPSAWPVLGHDGGGGAGASSSGGANPNQPPSSQPPPNLCNPPGT
SHAQGNGIRGGSMVGGTNGNLPVGGGNSWGESSEPHPSSSTNVSFSSEPQNLNTDGPNHT
SKQQEPPIHSVSGWSGPSGGMGSLGQPPPGASQLVNGEDGSSVWGNNGDSKSVASSAEPS
GWDSGAGGWGSHGSSGGGTSGGWGGQSSRDAWGKQHSGEVQGGWDAPSSPPQQARSWSTR
APSTTAASEGSSEGMDGEGHSLRQDRSSRDEPAPLLPAPDLDPRVLCNTGWGQTPVRQHT
SWDMEEAARTQRKADAAGTDSWGGSGPNTPTETAQGPSNPSHGPPHRADPKSEGPGPGPQ
AAPGWGGSKPPASQPGSGWGEPPSSKNPPNGPGGWGNPPPGGPGSGPNMPKAGSQSWGAP
EEKSPSWDGSHGKAPKPQGWGDGPKPPHSGWGNSAGGGGNGGGGDWREPADGKKSSPTTN
PPWEGEGAGGWKESNRGWGKPGPGMGGNVGGGWGEPAMAQQRPSCPAQGWGGKPQESSNG
NSGGVRGSMGGAGGGEGSMGSWGGPGPVKPSVSGREGNGGGGGSKQDPSGGEPTGWEEPS
PPSIRRKMEIDDGTSAWGDPGAYNKTVNLWDKNNPGGGGPPQGRPPGNAPACPPGNNNNH
PPHHTYHGPPPPLQSHGGHNPQGPGQSSGPMDTAMPHQTAPPPHSRPPLMGPGWGEPSSV
HPKPEPSWGEPAPPLVSVDNGTSAWGKPTGSHGGWGVGDNSPEPYRRGNPPLGSAPCKPA
PKSMQDGWGGGGGGEDMGLSGGQWDPDDGDMWSSQASQESNSWGNRPRKAPPKGKIPGKQ
EEAWIMNRLIKQLTDMGFPRDPAEEALKRNNMNLDQAMSALLEKKTELDRRGMGMSDYNN
CLINKGPMGCRPPLHSKESSSDRSPFLDKDGVGSLVEDVHTSSPFMPCSPGPLGLKLPSL
PLSSQGLGGPQGLAMQNLNNRQMQSGMLGSSGAAQARAMQQPPPQPSVPPLGSSQPSLRA
QVPQFLSPQVQAQLLQFAAKNIGLNPALLTSPINPQHMTLLNQLYQLQLAYQRLQIQQQM
LQAQRNVSGPIRQQEQHVARTINNMQQQIQQHQRQLAQALLMKQQQTLGSLSSSGLHHGQ
GKSALDLFPGHPQAPGLPDLQTKEQQSSPNSYSPYPLSGLNPNMNVTCIEVGGLSMKELP
QPQSRLSQWTHPNSMDSLSGGSSSLESNLNKHGSNLGPPGKPPQMEDGYSPYGMMPVSES
PTNPLVPPDSWSQGKSPNDKMVNGANITWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPS
GPTINTNIQDVNRYLQRDRSGGSSPTSSQNEALPPSTDWPVSAYSSSFSLSSPETDDPGK
LSDMKSTWSPGPISHPSQVSLSHELWKVPQGPRSNTAAPTRPPPGLTNPTKHSSTWGGNS
LGLAQGWSSSYSSAATTWSTDSSNRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLN
LTQGNALVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVQRFFAQGQQLASTTSWQ
ADPGVNQTRMGGSGPRSSHPIGHPHWNSGGSSGGMGGGGAKTGGDLLWGGVPQYSSLWGP
PSGEEGRVMGSPTPINTLLPGDLLSGESM
NT seq
5850 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagagaaagcaagaagaaaagaaaaagaaggaagctgctcagaaa
aaggtcactgaacagaaaaccaaagtgccagactcagccaagcccggccccacccctcct
ccccccgccaaccccagtgccaccccgtctgtgccccccaccagcagcagtggcagtaat
ggcaagcgcgccccctccagtgcccagcagcagtcccagccctcgcccgcccaacagcgt
tacccgccaagagagatccctccgcgcttccgccagcaggagcacaagcagctgctgaag
aggggtcagccgctgccccctgggacccttccaactgtaccaggacgccccgaacctgac
tcgagtcagaaatcctctggtgcatcgcacacagagctgcccccacagagtggcccggga
gcccattatgagaatccccattggggacaccagccagccaatcggagtgccacttccgcc
tcagcgtcggccaatcacagtggctgggatacagtgatcatcgacgagagcgacaccgag
gcctggccctccatttcccgcagcagccagagccagggccctgcaggaggatgcccctcg
gacactgacccggccagcagcagcagcagcagtatgagcatggccacgggggccaacggc
cagataggccactttcctgccaactaccccagcagcaaaggagccagctctgggcccggc
agctcagccaatcaccctggggcaggcacggtcggcatggcctccagccaaggagcagcc
aatcggggctggggatctggtcccggtccctccccccatggccctcctcagtcctcctct
gtcgggggtggggaggggaagagtgatggcccaatgggaggaggaggaggcaggggttgg
ggctcctcttcctccaccacctccaacttgaacctgaaccccaatgccaacccctcggcc
tggcccgttctggggcacgacgggggcggaggagcgggggcaagcagctcagggggagcc
aaccccaatcaacccccttcttctcaaccccctccaaacctctgcaacccgccaggcacc
tctcacgcccaggggaacggcatcagaggaggatccatggtgggcggcaccaacggcaac
cttccggttgggggaggcaactcctggggagaatcatctgagccacacccatcctcatcc
acgaatgtgtctttcagctcagaacctcagaaccttaacactgacggaccaaatcatact
agcaagcaacaggagccccctatccacagcgtgtccggctggagtggcccctccggaggt
atgggctccctgggccagcctcctcctggagcttcccagctggtcaatggagaggatggc
agctccgtctggggcaacaatggagactccaagtcagtcgcctcctccgcggagccttcg
ggctgggactctggggccgggggctgggggagccatggaagcagtggtggtggaacctct
ggaggctggggaggccagagcagcagagacgcctgggggaagcagcattctggcgaggtc
caggggggctgggacgcccccagctctcctccccagcaggccagatcctggagcacccga
gcccctagcaccacggcggccagcgagggcagcagcgagggcatggatggagagggacac
tccctccgacaggaccggtcgtccagggatgagcctgcccccctgctcccagcccctgac
ctggaccccagggtgctgtgcaacacaggctggggccagacccccgtccgccagcacacg
tcctgggacatggaggaggcggcacgcacccaacgaaaggcagatgctgccgggacggac
tcttggggaggctccggccccaacactcccaccgagacagcccaagggccctccaacccc
agccacggaccccctcatcgggctgaccccaagagcgagggtcccgggcctggtcctcag
gctgcccctggctggggtggttccaagcctccagccagccaacccggctctggctggggt
gaaccaccgagcagcaagaatccccccaacggtcctgggggctgggggaaccccccacca
ggaggccccgggtcaggccccaacatgcccaaagctgggagccagtcctggggtgctcca
gaggaaaagtccccaagctgggatggttcccacggcaaggcccccaagccccagggctgg
ggagatgggcccaagccgccccacagcggctggggcaacagcgctggaggagggggcaat
ggaggagggggggactggagagagcctgcagatggcaagaagagcagtcccaccaccaac
cctccctgggagggagaaggagcaggaggctggaaagagagcaaccgaggctggggaaaa
cctggtccggggatggggggaaatgttggtggaggctggggggagccagcgatggcccag
cagcgcccaagttgccctgcccaaggatggggcggcaagccccaggagagctccaacggc
aatagcggaggagttagagggagcatgggcggggcaggaggtggagaagggagcatggga
tcctggggaggccctggccccgtgaagcccagtgtatcaggccgggagggcaacggggga
ggaggagggagcaagcaggacccctcaggaggagagcccacagggtgggaggaaccttcc
ccaccctccatccgacgcaagatggagattgacgacggcacctcggcttggggcgacccg
ggcgcctacaacaagacggtcaacctctgggacaagaacaaccctgggggaggagggcca
ccccaaggtagacccccagggaacgcccccgcatgcccccctggaaacaacaacaaccac
ccaccacatcacacctaccacggccccccaccacccctccagagccatgggggccacaac
ccccagggcccaggccagagcagtgggcccatggacacagccatgcctcaccagactgcg
cctccaccacacagcagaccacccctcatgggtccaggctggggggagccttccagtgtc
caccccaaaccagagccctcctggggggagcctgctccccctctggtcagcgtggacaac
gggacctccgcctgggggaaacccaccgggagccatgggggctggggtgtgggtgacaac
agccctgaaccctacagacggggcaacccaccccttggatctgcaccttgcaaaccagcc
cccaaatctatgcaagacggctggggtggcggaggtggcggggaggacatgggtttgtct
gggggccagtgggaccctgatgacggggacatgtggagcagccaggcctcccaggagagc
aactcctggggcaacagacctaggaaggccccacccaaggggaagattccgggcaagcag
gaggaagcctggatcatgaatcgcctgatcaagcagctgacagacatgggcttccctaga
gatccagccgaggaggctctgaagaggaacaacatgaacctggaccaggccatgagtgct
ctgttggagaagaagacagagctggacaggcgggggatgggcatgtccgactacaacaac
tgtctgatcaacaaggggccaatgggctgccggcctcccctccactccaaagagtcctcc
tcagatcgctcccctttcctcgacaaggacggtgttggtagcctggtggaggacgtccat
acctcctcaccgtttatgccttgttcccccggccccctcggcctgaaactcccctccctg
cctctatccagccagggcctgggcggcccacagggcctagccatgcaaaacttgaacaac
agacagatgcagagtggaatgttgggcagtagcggtgcagcacaagcccgggccatgcag
cagcctcctcctcagccgtcagtgccgcctctcggctcctcccagcctagtctacgcgct
caagtgcctcagtttctctcccctcaggttcaagcacagctcttacagtttgcagcaaaa
aacattggtctgaatcctgcacttttaacctcaccaataaaccctcaacatatgaccctt
ttgaaccaactataccagctgcaactggcgtaccagcgtttacaaattcaacagcagatg
ttgcaggcacaacgtaatgtttctggtcccatccgacagcaggagcagcacgttgcacgt
acaatcaataacatgcagcagcagatccaacagcaccagagacagctggcccaggccctg
ctgatgaagcagcagcagaccctcggctccctctcctcctccggcctgcaccacggccaa
ggcaaatcagccctggacttgttcccaggccacccccaggctccgggcctacccgacctg
cagaccaaagagcagcagtcgtccccaaactcctacagcccctaccctctctctggactg
aatcctaacatgaatgtaacctgcatagaggtgggaggcctgtccatgaaggagcttccc
cagccccagtctcgcctctcccagtggacacaccccaactccatggacagcctctctgga
ggctcatcctctctggagtccaacctgaacaagcacggttccaacctgggcccccccggg
aagcccccccaaatggaggatgggtacagcccctacggcatgatgcctgtctccgagtcc
cccaccaaccccctggtgcccccagacagctggagccagggcaagagccccaacgacaag
atggtcaacggcgccaacatcacctggcctccagagttctgcccgggcgtgccctggaag
ggcctgcagaacatcgacccggagaacgaccccaacatgaccccggggagcgtgcccagc
ggccccaccatcaacaccaacatccaggacgtcaaccgctacctgcagagagaccgcagc
ggaggctcctcccccacctcatctcagaacgaggccctgcccccctccaccgattggcca
gtcagtgcctactctagctcgttcagtctgtcgtccccggaaacggacgacccaggtaaa
ttgtcggacatgaagtccacctggtccccggggcccatctcccacccttcccaggtctct
ctgtcccatgagttgtggaaggtcccccaggggccccgcagtaacacagccgcccccaca
cggccccccccgggcctcaccaaccccaccaagcactcctccacctggggaggcaactcc
ctgggcctggcccaaggctggagcagctcctactcctcagcagctaccacatggagtaca
gacagctccaacaggaccagtagctggttggtcctgaggaacctcactccccagatagac
ggctccaccctgcggacgctatgcatgcagcacggccccctcatcacattccacctcaac
ctgacccagggcaacgcattggtgcgctacagctccaaggaggaggccgccaaggcccag
aagtccctgcacatgtgcgttctgggtaataccaccatcctggcagagtttgctggggag
gaagaggtccagcgcttctttgcacagggccagcagctagcctcaactaccagctggcag
gctgacccgggtgtcaatcagacgcggatgggtggttccgggcccagatcctcgcaccct
attggccacccccactggaactctggcggcagcagtggcggcatgggaggaggtggagcc
aagacggggggagatctgctctgggggggcgtgccccagtactccagcctatggggaccg
cccagcggagaggaggggcgggtcatggggagtcctactccaatcaacacgctgctgcct
ggggacctgctgagtggggagtccatgtag
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integrated database retrieval system
