Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365151
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Entry
139365151 CDS
T10872
Name
(RefSeq) RNA-binding protein with serine-rich domain 1-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139365151
03015 mRNA surveillance pathway
139365151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139365151
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139365151
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
RRM_ACIN1
Nup35_RRM_2
RRM_5
RRM_MUD2_C
RBD_AKAP-17A
Motif
Other DBs
NCBI-GeneID:
139365151
NCBI-ProteinID:
XP_070958685
LinkDB
All DBs
Position
13:57065580..57071533
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AA seq
272 aa
AA seq
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MAPSPTKRKEEEKSKDRGKEKTATKEGGDKERGREKGHKRRSASTGSSSSSSSSSGSSSG
SSSGSSSSGTSRSGSSRSSSSSSSSSSGSPDPGRRRHDNRRRSRSASKTQKKGDDKERRR
RSPSPKPTKVHLGRLTRNVTKDHIQEIFATYGKIKMIDMPVERLHPNLSRGYAYVEFETP
EEAQKALKHMDGGQIDGQEITTSAVLAPRIRPPPRRQSPPRRMPPPPPMWRRTPPRMRRR
SRSPRRRSPVRRRSRSPGRRRHRSRSSSNSSR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgtcacccacaaagcgtaaggaggaggaaaagtcaaaggacaggggaaaagag
aagactgccactaaggaagggggggacaaggagagaggcagggagaagggccacaaacga
cgcagtgcatccactgggagcagcagcagctccagcagcagctctggctccagctctggt
tcctccagcggctctagttcctctggcaccagccgctctgggtcttcccggtccagctcc
tccagctcatctagttcctctgggtcacccgaccccggccgccgccgccacgacaaccgt
cgccgctcccgctccgcgtccaaaacacagaagaagggagatgacaaggagcgaaggaga
aggagcccgagccccaagcccaccaaagttcacttaggaagactgaccagaaatgtgacc
aaggaccacatccaggagatctttgccacctacggcaagatcaagatgattgacatgcca
gtggagaggctccacccaaacctgtcccggggctacgcctatgtggagttcgagactcca
gaggaggcccagaaggccctgaaacacatggatggtggtcagattgatggtcaggagatc
accacctctgccgtgttggctccaaggatacgccctccccctcgtagacagtcaccccca
cgcagaatgcccccacctccccccatgtggcgccgcaccccacctcgcatgaggagaagg
tctcggtcaccaaggagacggtccccggtgcgccgacgctccaggtccccggggcgcaga
cgtcatcgttcccgctccagttccaactcctcacggtag
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