Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365153
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Entry
139365153 CDS
T10872
Name
(RefSeq) transcription factor Sox-8-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139365153
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139365153
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
139365153
NCBI-ProteinID:
XP_070958688
LinkDB
All DBs
Position
13:57273506..57277779
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AA seq
467 aa
AA seq
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MLKMTAEHDKSISDPPCSPAGTTSSMSQDDSDSDAPSSPTGSDGSLLAGIGKKLDGEDDD
RFPACIRDAVSQVLKGYDWSLVPMPVRGNGSLKNKPHVKRPMNAFMVWAQAARRKLADQY
PHLHNAELSKTLGKLWRLLSENEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKPGQS
DSDSGAELGNHMYKAEPGLLAGIADGHHHPEHAGQPHGPPTPPTTPKTDLHHGGKLDMKH
EGRRLLDSGRQNIDFSNVDISELSTDVISNMEAFDVHEFDQYLPLNGHASTAGAGVDHHG
HHGPNPASSAISYTSYSHATANGAVWSRKSATMSASSSTSSEAVPQHRAHIKTEQLSPSH
YSGDSHSHSSPSHSDYSHSYTAQTCVTSSAAAASFSSSQCDYTDLQSSNFYNPYSGYPSS
LYQYPYFHSSRRAYHGSPILNSLSIPPTHSPPTSNWDQPVYTTLSRP
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaatgaccgcagagcatgacaagtccatcagcgacccaccgtgtagcccggcg
gggactacgagctccatgtcgcaggatgattccgactcagatgcgccctcgtcgccaacg
ggatcagatggatcactcctcgctggtataggaaagaaactggacggcgaggatgatgac
cgattcccagcctgcatacgtgacgcggtgtcgcaggttctcaagggatatgactggtcc
ctcgtccccatgcccgttcggggaaatggctcgctgaaaaataaaccccatgtcaaaaga
ccgatgaacgcgttcatggtgtgggcgcaagcggcgcgcagaaagctcgcggaccaatac
cctcatctgcacaatgcggaactgagcaagactttggggaagctgtggcgcttactctca
gagaatgagaagcggccatttgtggaggaagcggagagacttcgggtgcagcacaaaaaa
gaccatcccgactacaagtaccagcctcggcgtcggaaaagtgtgaaacctgggcagagt
gactccgactctggtgcagagctggggaatcacatgtacaaggctgaaccaggattgttg
gcaggcatagccgatggacaccaccaccctgaacatgcaggccaaccccacggtccaccc
acaccccccaccacccccaaaacggacctgcaccacgggggcaaactggacatgaagcac
gagggacggcgcctgctggacagcggccgacagaacatcgacttcagcaacgtggacatc
tccgagctcagcaccgacgtcatcagcaacatggaggccttcgacgtgcatgagtttgac
cagtatctaccgctcaacggccatgcctccaccgctggcgcaggcgtggaccaccacggc
caccatggaccaaaccctgcatctagtgctatctcgtatacatcatacagccacgccaca
gcgaacggtgccgtttggagccgcaagagtgccaccatgtctgcctcttcctcaacttct
agcgaggcggtcccacagcaccgggcccacatcaagacggagcagctgagccccagccac
tacagcggcgacagtcactcccacagctccccctcccactcagattactcccactcctac
acagcccagacctgcgtgacgtcatccgcagctgcagcctccttctccagttctcagtgt
gactatacagacctccagagctccaacttttacaacccctactcaggctacccttccagc
ctgtaccagtacccttactttcactcctccagaagggcgtaccacgggagccccatcctc
aacagtttgtccattccccccacccacagtccccccacctccaactgggaccagccggtg
tacaccaccctatccagaccgtag
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