Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365250
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Entry
139365250 CDS
T10872
Name
(RefSeq) actin-related protein 2/3 complex subunit 1A-A-like
KO
K05757
actin related protein 2/3 complex, subunit 1A/1B
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04144
Endocytosis
ocla04517
IgSF CAM signaling
ocla04530
Tight junction
ocla04810
Regulation of actin cytoskeleton
ocla05100
Bacterial invasion of epithelial cells
ocla05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
139365250
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139365250
09144 Cellular community - eukaryotes
04530 Tight junction
139365250
09142 Cell motility
04810 Regulation of actin cytoskeleton
139365250
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
139365250
05100 Bacterial invasion of epithelial cells
139365250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139365250
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ocla04812
]
139365250
Membrane trafficking [BR:
ocla04131
]
Others
Actin-binding proteins
Arp2/3 complex
139365250
Cytoskeleton proteins [BR:
ocla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Arp2/3 complex
139365250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
Beta-prop_THOC3
WD40_CDC20-Fz
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_WDR5
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
WDR55
WD40_Gbeta
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
EIF3I
Rax2
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
139365250
NCBI-ProteinID:
XP_070958855
LinkDB
All DBs
Position
13:complement(63276173..63288840)
Genome browser
AA seq
356 aa
AA seq
DB search
MSLYSFGLEPLSCHAWNKDRTQIAVSPNSSVVIIYEKKGNEWAKIHELTEHSGRITGIDW
APDSNRIVTCASDRNAYVWTLKDKVWKPTLVLVRINRAATFVKWSPLENKFALGSGARLI
SVCYFEKENDWWLSKHIKKSIRSTVMCLDWHPNNILLAAGSSDFHCRIFSAYIKEIEDKP
GPTAWGAKMPFGEMLLETKDCGGWVHSVSFSPSGDHLAWVAHNSSISVADATQGKEMTQL
TTDRLPLVSVLYVSPTEMVAAGHDCCPFQFSYKGPGSLKFVKKLDIPKQTSRGSMSAMQH
FRNLDKKATDDESNELGCLHQNSITQLCIVSGTKAHVDKYSSVGLDGAMVLWDFKH
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtacagctttgggttggagcctctctcctgtcatgcctggaataaggacagg
acacagattgctgtcagccccaacagcagtgtggtgatcatctatgagaagaaggggaac
gagtgggccaagatccacgagctgactgagcacagtggacgaatcacaggcatcgactgg
gctccggattcgaaccgcatcgtgacgtgtgcatcggaccgtaatgcgtacgtgtggacc
ctgaaggacaaggtgtggaagcccactctggtgttggtgaggatcaaccgggctgctact
ttcgtcaagtggtcccctctggagaataagtttgccctgggcagtggagctcgcctcatc
tctgtctgctacttcgagaaggagaacgactggtggctcagtaagcacataaagaagagc
atccggtccacggtgatgtgtctggactggcaccccaacaatatcctgttggctgcagga
tcctctgacttccactgcaggatcttctctgcctacatcaaggaaatcgaggacaagcca
ggcccgacagcttggggggctaagatgccatttggggagatgctgctggagaccaaggac
tgtggaggttgggtacacagtgtctccttctcccccagcggagaccacctggcctgggtc
gctcacaacagcagcatcagtgtggccgacgccacccaggggaaagagatgactcagctg
acaacggaccgcctccctctagtgagcgtgctctatgtgagccccacagagatggttgcc
gcgggccatgactgctgtccgtttcagttctcctataagggccccggcagtctgaagttt
gttaagaagctggacatccccaagcagacctctaggggcagcatgtccgccatgcaacac
ttccgcaatctggataagaaggctactgacgacgagagcaacgagctgggctgcctgcac
cagaacagcatcactcagctgtgtatcgtgtcaggaactaaggcccacgtggacaagtac
agcagtgtgggtctggatggagctatggtcctctgggacttcaagcactga
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