Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365258
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Entry
139365258 CDS
T10872
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H-like
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010
MAPK signaling pathway
ocla04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
139365258
04020 Calcium signaling pathway
139365258
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139365258
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
139365258
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Motif
Other DBs
NCBI-GeneID:
139365258
NCBI-ProteinID:
XP_070958865
LinkDB
All DBs
Position
13:complement(64611390..64714055)
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AA seq
2189 aa
AA seq
DB search
MIVILLNCVTLGMYQPCEDVTCQAEWCLILQVFDDCIFAFFAVEMVIKMVALGIFGSKCY
LGDTWNRLDFFIVMAGMMEYSLDGHNASLSAIRTVRVLRPLRAINRVPSMRILVTLLLDT
LPMLGNVLLLCFFVFFIFGIVGVQLWAGLLRNRCFMGEDFRTLYNLSLSVYYQPEESEED
PFICSAIRENGMLRCHDVPPYSEGGAECSLPAPSLGGEGGARDGCVNWNQYYNVCRPGNV
NPHKGAVNFDNIAYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFIFLIIVGSFFMIN
LCLVVIATQFAETKQRENALMREQRARYMSNDSTLASYSEPGSCYEEMLRYVSHLYRKLT
RRLQRMYTTWHSKRRKKVNPNGGGSGPGVGRRTSGNAPWLRPVHNLLQHHQRHHCRHSNG
GHTPVATGGEELEMRSLPVPGRDPSVTAGLGSSLLCRLNGGMNYPTILPSFVCSYRSFTP
TDPHNPLPSHPHKPLPTQPSPLSENSPDPLSKLHQLMGQHSRPRLLYQLAGVVPSPLLLE
LLGCPLCARALEGMELDLSDLEGSRGEAHTLHDFPQGGEGRGGRGRRRRKAGLGAGLGLG
VKRASNRLLELGTGFRDRLKRIVDSKYFNRGIMTSILINTLSMGIEYHQQPVELTDILEI
SNIVFTCMFLLEMMFKLLAFGLFGYIKNPYNIFDGIIVIISVWEIVGQADGGLSVLRTFR
LLRVLKLVRFLPALRRQLVVLMKTMDNVATFCTLLMLFIFTFSILGMHLFGCKFNQQMEN
GDTIPDRKNFDSLLWAIVTVFQILTQEDWNVVLYNGMASTSPLAALYFVALMTFGNYVLF
NLLVAILVEGFQAEGDANRADSDDDKRSDDDGEEEKKENVGELKDTELKMYSLMMTANGH
ADRNTLAPPITITRTAATPKSSLGPESVLGEGLVCSDFGDSRRCSAAASIDPSAYDQRSL
SSPGQHSPLPPRGQGSVSGWGSRRSSWNSLNRASSLKRSKTSGERESLLSGEGGGEEEEG
ALELLQVSSLGPSVTGEYGDCNGRSLHHMTYDPNKDLSPDDDMEEDNLWFRVRRTLQSHK
PRWCREHEDWNLYLFSPQNSFRVWAKGMISHKMFDHVVLLFIFLNCITIALERPGILPHS
TERVFLSVSNYVFTVIFLAEMTVKIVALGFCWGKQSYLKSSWNVLDGILVFVSLVDILVS
LALTGGNRILGILRVLRLLRTLRPLRVISRAPGLKLVVETLITSLRPIGNIVLICCAFFT
VFGILGVQLFKGKFYLCEGLDTRNITTKSDCLLANYRWTRRKYNFDNLGQALMSLFVLSC
KDGWVNIMYDGLDAVGVDQQPVRNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCR
QDQEEEEQRLREEKRLKILEKKRRSKEKDGAEAQQRPYYADYSPVRLTIHTLCTSHYLDL
FITIIIGINVVTMSMEHYNQPQYLEEALKYCNYLFTCIFIIETLLKLVAFGLHRFFKDRW
NQLDLAIVLLSIMGITLEELKMNASLPINPTIIRIMRVLRIARVLKLLKMATGMRALLDT
VMQALPQVGNLGLLFMLLFFIYAALGVELFGKLECNDSNPCEGLSRHATFENFGMAFLTL
FRVSTGDNWNGIMKDTLRECRPEERSCLTYLPLMSPVYFVTFVLMAQFVLVNVVVAVLMK
HLEESNKEAKEDAEMDAEIALEMERARRLSSASNALALGGAYVGPRPHSPGQEEEGQCSQ
EEELLSPRKMSVSRMHSLPNDSYMFPPVRSASAPYPLQEHSSPLHQASGSVTSVHSQPCQ
DQAVLPGLPHPVPPHIAPPRPSPRGLRRQVSVKVDSVEVQSVASVDRQDPLSTLRLLSPS
RPPSPPFLSDPADEEVWHITSSARHWWDRHGSGRCHSLSPYASPDSPPSLRSRGSALSLL
GAGLQAHDPRKGFSVDTQGFLDKPRCPDDQRRHSIEICPSPPEDRLLGEVDGEERRPRGQ
GSEVRGHRKKRMSPPCISIHPPCDPAGRAPSEPQADCNPLLRRRTPSYDVADAHTPTHRL
TPTHTPTHRLTPTHTPVRTLTPTHTPTLTPTHHHTLVQTLPHAVTHTPTHTHTHTHRLPH
SHTLIRTHTLPHSHTHTPSPTHTLSLNSDARPSSLYSDYKPLPQFTFDQPEHRYTSGMSA
GLSSNEPATSPSHFNSRAGFSSMNRRTAQ
NT seq
6570 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgattctcctgaactgtgtgactctggggatgtaccaaccctgtgaagacgtc
acctgtcaggcagagtggtgcctcatactacaggtgtttgacgactgtatctttgcgttt
ttcgcggtggagatggtcattaagatggtggctctggggatcttcggttctaagtgttac
cttggcgacacttggaaccgactggacttcttcatcgtcatggcagggatgatggagtat
tctctggacggacacaacgccagtctgtcagctatcaggaccgtacgcgttctgcggccg
ctccgggcaatcaacagagtccctagtatgcgtatcctggtgactctgctcctagacact
ctccccatgctgggtaacgtcctgctcctctgtttcttcgtcttcttcatcttcggcatc
gtcggcgtgcagctgtgggcggggctactgagaaacaggtgcttcatgggagaagacttc
agaacgctctataacctgtcattgagtgtgtactaccagccggaggagagcgaggaggac
cccttcatctgctcagcaattcgggagaacggaatgttgcgttgccatgacgtcccgccc
tacagcgagggaggggctgagtgctcgctgcccgcgccctctcttggcggggaaggcggg
gccagagacggctgtgtgaactggaaccagtactataacgtctgtcggcccggcaacgtc
aaccctcacaaaggagcggtgaactttgacaacatagcctacgcatggatagccatattc
caggtgataaccctggaaggctgggtggacatcatgtactacgttatggatgctcactcc
ttctacaattttatatattttatattcctcatcatagtgggctctttcttcatgatcaac
ctgtgtctggtagtcatagcgacccagtttgcggagacgaagcagcgtgagaacgcgttg
atgcgcgagcagcgagcgcgttacatgtccaacgacagtactctggccagctacagcgaa
ccgggatcctgctacgaagagatgctgagatacgtttcacacctctaccgtaaactgacc
cgacgactacaacgcatgtacacaacctggcacagtaagcgtcgtaagaaggtgaaccct
aacggaggaggaagtggtccgggggtcggccgcagaacgtccggaaacgccccgtggctc
cgccccgtgcacaacctgctgcaacatcaccagcgccaccactgtcggcacagcaacgga
ggacacacccccgtagcaacaggtggggaggagctggagatgaggtcacttcctgtcccg
ggtcgtgacccctctgtgaccgctgggctggggtcgtctctcctgtgtcgtctgaacgga
gggatgaactaccccaccatcctgccctccttcgtctgcagctaccgcagcttcaccccc
acagacccccacaaccccctcccctcacacccccacaagcccctccccacacaaccctcg
cccctctcagaaaacagtccggaccccctcagcaagctgcatcaactcatgggacagcac
agccgtcctcggctgctgtaccagctggctggcgtggtgccctcccctctcctcctggag
ctgttgggctgcccgctgtgtgcccgcgccctagagggcatggagctggacctgagcgac
ctggaggggtctaggggagaggcccacaccctgcacgacttcccccagggaggagagggg
cgcggcgggcgtgggaggcgccggcggaaggcagggctgggggcagggctggggctcggg
gtgaagagggccagtaacaggctgctggagctggggacaggattcagagacagactgaaa
cgcatcgtagacagcaagtacttcaacagagggatcatgacctccatcctcatcaacact
ctcagtatggggatagaataccatcaacagccggtggagttgactgatatcctggagatc
agtaacatcgtgttcacctgcatgttcctcctggagatgatgttcaagctgctggccttc
ggtctcttcggctatatcaagaacccctacaacatcttcgacggtatcatcgtcatcatc
agtgtttgggagatcgttgggcaggcggacggcggtctgtctgtcctgcgtaccttccgt
ctgctgcgggtcctgaagctggtcaggttcctgcccgccctgcgcagacagctggtggtt
ctgatgaagactatggacaacgtagccaccttctgtacactgctcatgctcttcatcttc
accttcagtatcctaggcatgcacctgtttgggtgtaaatttaatcagcagatggagaac
ggagacaccatcccagaccgcaagaactttgactcgctactctgggccatcgttactgtg
ttccagatcctgactcaggaggactggaatgtggtcctgtataacggcatggcctccacc
tctcctctcgctgctctctactttgtggctctgatgacatttgggaactacgtcctcttc
aacctgctggtggccatcttggtggagggcttccaggctgagggtgatgccaaccgggcg
gactctgacgatgacaagaggtctgatgacgatggagaggaggagaagaaggagaatgtt
ggagagctgaaagacacagagctgaagatgtattctctgatgatgacggccaacggtcac
gcggaccgcaacactctggcccctccaataaccatcacgcgcacggcggcgacgcccaag
agctcattgggccccgagtccgttctgggggaggggctcgtgtgttcagacttcggcgat
tctcgtcgctgcagcgctgctgcttccatagacccctcggcctacgaccagcgctctctg
tccagccccggccagcactcgcccctccctcccagaggtcagggttcagtcagtgggtgg
ggcagcaggaggtcaagttggaacagcctcaaccgcgcctccagcctcaaacgcagcaaa
accagcggagagagagagagtctgctctcaggggagggaggaggggaggaggaagagggg
gccttagagctgctacaggtgtcctctctgggcccgtctgtaacaggggagtacggggac
tgtaacgggaggagtcttcatcacatgacctatgaccccaacaaggacctttcacctgac
gatgacatggaggaggacaacctgtggttccgggtcaggagaacgctgcagagccacaag
ccacgctggtgtagagaacatgaagactggaacctctacctgttctcccctcagaactcg
ttccgtgtgtgggctaaggggatgatctctcataagatgtttgatcacgtggtcctcctc
ttcatcttcctcaactgtatcaccatcgctctggagaggcccggcattctgcctcacagc
accgagagagtgtttctgagtgtctccaactacgtgttcactgtcatcttcctggctgag
atgactgtcaagattgtagcgttggggttctgctggggtaaacagagctacctgaagagc
agctggaatgttctggatgggatcctggtgtttgtctctctggtggacatccttgtttct
ctggccttgactggagggaaccgcatcctgggaatcctcagagtactacgactgctacgc
acactaagacctctcagggtgatcagtcgagccccagggctgaagctggtagtggagact
ctgatcacgtctctgagacccatcgggaacatcgtcctcatctgctgcgctttcttcact
gtgtttggaatactgggagtacagctgttcaagggtaaattctacctctgtgaaggcctg
gacaccagaaacatcaccaccaagtccgactgtctgctggccaactaccgctggacacgc
aggaaatacaacttcgacaacctgggacaggcgctgatgtctctgttcgtgctgtcctgt
aaggatggatgggtcaacatcatgtatgatggcctggatgcagtgggagtagaccagcag
ccggtgaggaaccacaacccgtggatgctcctctacttcatctccttcctcctcatcgtc
agtttcttcgtcctcaacatgttcgtgggcgtggtcgtggagaacttccacaagtgtcgt
caggaccaggaagaggaagagcagcggctacgggaagagaagaggctcaaaatcctggag
aaaaagcgcaggagtaaggagaaggatggtgccgaggcccaacagagaccctactatgca
gactactcccccgtgcgtctcaccatccacacgttgtgcaccagccactacctggacctc
ttcatcaccatcatcatcggcatcaacgtcgtcaccatgagcatggagcattacaaccag
ccacagtatctggaggaggctctgaagtactgtaactacctgtttacctgtatcttcatc
atcgagaccctgctgaaactagtggccttcggactgcacaggttctttaaagacaggtgg
aaccagctggacctggccatagtgctgctgtccatcatgggcatcactctggaggagctg
aagatgaacgcatcgctacccatcaaccccaccatcatcaggatcatgagagtcttgagg
atcgctagagtgttgaagctgttgaagatggctacagggatgagagctcttctggacacg
gtcatgcaggctttgccacaggtggggaatctgggtctgctcttcatgttgctgttcttc
atctacgcagcactgggagttgagctgtttgggaaactggagtgtaacgacagtaatccg
tgtgagggtctgagtcgccacgccacctttgagaactttgggatggcgtttctcacgctg
ttcagagtctctactggggacaactggaacggcatcatgaaggacacgctgcgtgagtgt
cgtccagaggagcgctcctgtctgacctaccttcctctgatgtctccggtctacttcgtg
accttcgtcctcatggcccagtttgtgctggtcaacgtggtggtggcggtgctgatgaaa
cacctggaggagagcaacaaggaagccaaggaggacgcagagatggacgccgagatcgcg
ctggagatggagagagctagacgtcttagctccgcctctaacgcgttggcgctaggcggg
gcctacgtggggccacgcccacactcacctggtcaggaggaggagggtcagtgcagccag
gaggaggagcttctgtccccaaggaagatgtccgtatccaggatgcattctctccctaac
gacagctacatgtttcctcctgtacgatctgctagcgccccctaccctctacaggaacac
agcagccccctgcaccaagcctcaggctctgtgacatcggtgcactcccagccatgccaa
gaccaggctgtactgcccggcctccctcaccctgttccccctcacatcgccccgccaagg
ccctcgcccagggggctgcgtagacaggtgtctgtgaaggtggactcggtggaggttcag
agtgttgcctcagtagacaggcaggaccccctctcaaccctccgcctgctctccccctcc
cgtcccccctctccgcccttcctctcggatcccgccgacgaggaggtgtggcacatcacc
agctcagcgcgccattggtgggacagacatggaagtgggcggtgtcactccctctccccc
tacgcctcccccgactcccccccctccctgaggagccgagggagtgcgctcagtctgctg
ggggcggggctacaagctcacgacccgaggaagggcttcagcgtagacacccagggcttc
ctggataaaccccgttgtcctgacgaccagcgacgacactccatcgagatctgcccgtcc
cctccggaggaccggctgctaggggaggtggacggggaagagaggaggcccaggggtcag
gggtcagaggttagaggtcacaggaagaagaggatgagcccaccctgcatctccatccac
cccccgtgtgacccagcaggccgcgccccctcggagccgcaggcagactgcaacccgctg
ctgagacgcaggaccccctcctacgatgtcgccgacgcacacactcccacacacaggctg
acgccgacacacacacctacacacaggctgacgccgacacacacaccggtacgcacactc
acgcctacacacacaccaacactaacgccgacacatcaccacacactcgtacagactctc
cctcacgcagtaacacacaccccgacacacacacacacacacacacaccgcctgccccac
tcacacactcttatccgtacacatactctacctcattcacacacacacactccgtccccc
acacacaccctgtccctgaactccgacgcgagaccttcctctctctacagtgactacaag
cccctcccacagttcaccttcgaccaaccggagcacagatacacgagtggcatgtccgct
ggcctatcaagcaatgaaccagccacaagtccctcgcactttaacagtagggcggggttt
agctcgatgaacaggagaactgcccaatga
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