Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365373
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Entry
139365373 CDS
T10872
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139365373
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139365373
03032 DNA replication proteins [BR:
ocla03032
]
139365373
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139365373
mRNA cycle factors
Common to processing body (P body) and stress granule
139365373
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
139365373
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
139365373
NCBI-ProteinID:
XP_070958905
LinkDB
All DBs
Position
2:complement(26595628..26609738)
Genome browser
AA seq
1104 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTHKKHIHSRSALECAYRTHLIAGVGFYQ
HLLLYIQSHYQLEMQDCIDWTHVTDPLIGRKKPVSATPKEMEWAQMACHRCLVYLGDLAR
YQNELAGVEAEQLSERFYHQALSVTPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKQLLVSFMYLQSLLQPKNS
LLETELTSLCQSVLEDFNLVLFYLPSPPHGHEATSPSEEELEEHDSPCALLPDTLIFKMV
VTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESQVPPLQTDNTD
DSELRDPSDSLTSEERPLQNGSLDHEEDEGGHRSTLAQKAGVGERKAEEEKQKQKKYARL
SMLRRRRATCKEDESDLSEGFESDEEEEEQRGCDDSGGASSGPPLTPAMLGKESKRGREH
PTEGTWESGSEEDEEGGTAFDVETDSDMNSQESRSDLEDIEDSETPENLDTTTQGELQPG
EDDEEQANPREDGDGDTPPTTNGPLLPSDPSISSNLQAMSSQLFQAKRCFRLAPTFSNVL
LRPHSSSTNPTPTDPDASSTTPSQETPPPPGDSPCDAGPGTANGTNDNEVDSDSECSGHS
NQSVHSEKTLSERLEILTNQGLIQVVKVFVDWLRTNTDIIVMCAQSSQSLWNRLSVLLNL
LPDGNKMLEAELGLNTEVTELLSVCEQPGLVQSLLLPEDLALRHLPALNLAHRRLDYTRP
RPSLSPVQECVVRVCCIRSFGHFLTNLQCNVLHFNPEAGIFTSITQSEQENLVQQAKAQI
RMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKTQSSMSPYLVPDSAALCQHLNLLR
HLAGSGCFIIIIPRTVIDGLDHLKKENAGARDGIRFLESQFRKGNRYIRCQKESGRSFER
DKLKRQDMEAWHLYKTVDSCRQLTVSQSNGDEDTAGMVTILTGHSVEDLCTRSVPMKSAV
QAVATAGMELKNIVEFYRQWKEIG
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgagtggacctgggcaggatagcgagccagaggcaaaagtcctcctcatcaagcggcta
tacagggcagtggttgagtcggtacacaagctggatgtcatcattggcagcaagtcatcg
tacagggaggtcttcaagcctgaaaacatcagccttcgcaacaagttgagggagctgtgt
gtgaagctgatgtttctccaccctgtggactatggtcgcaaggctgaggagcttctgtgg
aggaaggtctactacgaggtcatccaggtcatcaagacccacaagaagcacatccacagt
cgcagtgccctggagtgtgcctacaggactcacctgatagccggcgtgggcttctatcag
cacctgctgctctacatccagtcccactaccagctggaaatgcaggactgcatcgactgg
acccatgtcaccgaccccctcatcggtcggaagaagccggtatcagccacccctaaggag
atggagtgggcccaaatggcctgccatcgctgcctggtgtacctgggagatctcgcccgt
taccagaacgagttggctggggtggaggctgagcagctgtcagagcggttctaccaccag
gccctgtcagtcactccgcacgtaggaatgcctttcaatcagttaggtacactggcgggg
agtaaattctacaacgtggaggccacctattactacctacgctgtatacagtcggagact
cccttcgagggggcctacgggaatttgaagcgtctgtttgataaagctgctaagatgtac
caccaggtgaagaaacaggagatgaagaagctgtctccctcacggcaaagatccaaggac
atcaagcaacttctggtgagcttcatgtacctacagagtctactgcagcccaagaacagt
ctgctggagacagagctgacctctctgtgtcagtcggtgctggaggattttaacctggtg
ctgttctacctgccctcgccgccacatggccacgaggccacttcccccagcgaggaggag
cttgaggagcacgactcgccctgcgccctgctccccgacaccctcatcttcaagatggtg
gtcacctgcctcatggtggtgcacagcctgaagcggggagggtccaagcagtacagtgcg
tcaatagccttcacgctggccctcttctcccacctggtgaaccatgtcaacatccgtctg
caggctgagctggaggagggggagagccaggtgcccccactgcagactgacaacacagac
gactctgagttgagagacccgtctgactcgttgacatcggaggagaggcccctgcagaac
ggctccctggaccatgaggaggacgaggggggccaccggagcactttggcccagaaagca
ggcgtcggtgagcggaaggcggaggaggagaaacagaagcaaaagaagtacgcccgcctc
tccatgctgcgccgccgccgcgccacctgcaaagaagacgagagcgacctgagcgagggc
tttgagagtgatgaagaggaagaagagcagaggggctgcgacgactctgggggtgcctcg
tcgggacccccactcacccccgccatgctggggaaggagagcaagagagggagggagcac
ccgacagaggggacctgggagagcggctcggaggaagacgaggagggcggcacggccttc
gatgtggagactgactcggacatgaacagccaggagtcacgctccgacctggaggatata
gaggactcagaaaccccggagaacttggacaccactactcagggggagctgcagcccgga
gaagacgatgaggagcaagccaatcccagggaggacggcgacggggacacccctccaacc
accaatgggcccctcctgcccagcgaccccagtatcagcagtaacctccaggccatgtca
tcccagctgttccaggccaagcgctgcttccgcctagcgcccaccttcagcaacgtgctg
ctgaggccccacagctcctccaccaaccccacccccaccgacccagatgcctcctccacc
accccctcccaggagacgccgcctcccccgggggactcaccctgcgacgccggcccgggc
actgccaacggaaccaacgacaatgaggtggattccgattcagagtgtagcgggcacagc
aaccaatcagtacacagcgagaagaccctgtcagagagactggagattttgaccaatcag
gggctcatccaggtggtcaaggtgtttgtggattggctgagaaccaacactgacattatc
gtcatgtgtgcacagagttctcagagcctatggaacagactgtctgtgctactcaacctg
ctgcctgacgggaacaagatgctggaagcagagctgggtttgaacactgaggtgacggag
ctgctgagtgtgtgtgagcagcctggcctggtccagtccctgctgctgcctgaggacctg
gccctgcgacacctacccgccctcaacctggcccaccgccgcctcgactacacccgcccc
agaccttccctcagccccgtacaggagtgtgtggtgcgcgtgtgctgcatccgcagcttt
ggccacttcctcactaatctccaatgcaatgtgctgcacttcaacccggaggcgggcatc
ttcaccagcatcacccaatcggagcaggaaaacctggtgcagcaggccaaggcccagatc
cgcatggcagaggaggaggctcgacgaaatcgcttgatgagagacatggctcagctccga
ctacagttggaggtgtctcagctagagggcagtctgcaacagcccaagacccagtcatcc
atgtctccgtacctggtacccgactctgccgccctgtgccagcacctcaacctcctcaga
catctggctggcagtggctgcttcatcatcatcattccccgcacagtgattgatggcctt
gaccacctgaagaaggagaatgccggagcgagagacggtatccgcttcctggagtctcag
ttccgtaaaggcaacaggtacatacgttgccagaaggagtcagggcggagttttgagagg
gacaaactgaaacgccaggacatggaagcctggcatctatacaagacggtggacagctgt
cgtcagctgaccgtctcccagagcaacggagacgaagacacagctggcatggtcactatt
ctcaccggtcactcagtggaggatctgtgtacccgctctgtacccatgaagtcggccgtc
caggcagtggcaacagcaggcatggagctgaagaacattgtggagttttaccgtcagtgg
aaggagattggctga
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