Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365843
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Entry
139365843 CDS
T10872
Name
(RefSeq) rab11 family-interacting protein 1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
139365843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139365843
Membrane trafficking [BR:
ocla04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
139365843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RBD-FIP
DUF4635
End3
Motif
Other DBs
NCBI-GeneID:
139365843
NCBI-ProteinID:
XP_070959006
LinkDB
All DBs
Position
14:complement(23003896..23019190)
Genome browser
AA seq
1095 aa
AA seq
DB search
MMSFIDLNDDQRWVPTHVNVTVLRARGLRTKGKHGGSRYVYTIIQVGKEKYTTGLVEKAT
VPEWNEECCFELLPGILEDGVRSAFPSGSGDLVLTIMHRVLIGLDVFLGQAILPLDKIFQ
DGMCPRDEWLKLNSKAGRKEKERGEIQVTVQFTRNNLTASMFDLTMKDKPRSAFGKLKDR
VTGRKIGDMESSSAIVPGRFATLSGSLGKPFREGDRGEGGEDPVEVAEEKRSKVKDFFKG
KGKLRSSSDTRLCSSLASESSVLSLTSERPCPPPLDLGILVDPSSPPSSPIYSNKVKVDT
HHRDTDLAKKVLNNTQSSPKILTHNRTLSDEASRITTTAVPQPYPAVESLKGQGMTPSQS
SLCINGSHIYRSKPVGPKGSGTLPSKLVLLEKCSPLSRSLQNLTKQSEDNGSAGEGRRWS
FDKVNKEDEYVEKEAVPHVSQVQSAQVGGRPVLAAASMLSSNTTVDSADKRKKLRKSLFS
GGKSDSLPAKLAPSQGCPLTEGRLRGWFGSSDSQNKPRLEVSSKVESDSDTPPPLPPRSP
IPTQCSSSTGRASPDSGHPTNTFTPFLTPNPISPSNPFLPCLQCNPFFEDLITEEARRSP
CATCSPCHSTALPCIPSTTHDVAVPKKMAAIRRERPRPVARQTSLPALLPRAVTASLPNP
FTSRSISESLGRECDESFDAFASSRLNSPKSSPTNHPSNATLWQAQVRSTPPHKGNTIPP
IEEMRMSEEEAEPPPLPPRRPITRPLVNKRSSDSWLHRGQELAVQKEACLLSQTGAASLQ
HTREGGHKRCTPSPHLYPSLGKDLLVSSDMSDFHTEHSQHYANISPESPSPFKSEDDFKN
FEDLHAKVAPNVRSPMSARLRPGVSLHASSPSSVAPSLVTETNAQAKLLPTPGPSSIHHP
PILRPSTGANATFAIAPCTSSSFSSSSSTSSTTVQPLVDARHTLLPEETQPASSLPRQES
SPHPVKPLTTTASQGEKKEGRSFLEKLKSSIHSGLAAKQTLAEAETEIEESLTDRSAQYE
QLTKMELISLLLQQQMDMENQKAASEQQAVPLKKHEAEMKKIKAQVRDLEDYIDRLLVQI
MEQTPTLLQVRSRHK
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgatgtcctttatagacttaaatgatgaccagagatgggtgcctacacatgtgaatgta
actgtccttcgtgcaaggggtttgcggactaagggcaagcacgggggtagccgttatgtt
tacacaatcattcaggtggggaaggagaaatacaccactggtttggtcgagaaggcgact
gtgccagagtggaatgaggaatgctgtttcgaacttctacccggaatactggaggatgga
gttcgcagtgcttttccctcagggagtggtgacttggtcctcaccattatgcaccgtgtg
cttatcggacttgacgtgtttcttggtcaagcaatcctccctttggataaaatatttcaa
gatggaatgtgcccgagagatgaatggctcaaactcaactccaaggccggccggaaggag
aaggagcgcggcgagatccaggtgacggtccagttcacccgcaacaacctgacagccagc
atgttcgacctaaccatgaaggataagccacggtctgccttcggcaaacttaaggaccgc
gtgacagggaggaagatcggcgacatggagtcctcatcagccatcgtgccgggacgcttc
gccaccctgtcaggttccctaggaaagcctttccgagagggggaccgaggggaaggggga
gaggaccccgtggaggtagccgaggagaagcggagcaaggtgaaggatttcttcaagggg
aagggaaagctgaggagttcgtccgacacaaggttgtgctcgtcgctggcctcagagagc
agcgtgttgtccttgaccagtgagaggccctgcccccctcctctggacctaggcatcctg
gtggacccttccagtccccccagctcccccatctacagcaacaaggtcaaagttgacacc
caccacagagacacagacctagctaaaaaagtgctcaacaacacacaatcttccccaaag
atactgactcacaatcgaaccctcagcgacgaggcaagtaggatcaccactactgccgtt
ccccagccctatcctgcagtggaatccctcaaaggtcagggtatgactccctcccaatcc
tctctgtgcatcaacggaagccacatctacagatccaaaccagtgggtcccaagggatca
ggcaccctcccatccaagctggtcctccttgagaagtgctcccccctctctcgttcgctg
cagaacctcacaaagcagagcgaggacaatggttcagccggtgagggacggcgctggtcc
ttcgacaaggtgaataaggaagatgagtatgtggagaaggaggccgtacctcatgtctcc
caggttcaaagcgcacaggtggggggtcgtcctgtgctggcagctgcctcaatgctgtct
tccaacaccacggtggactcagcagacaaaaggaaaaagctcagaaagtcgttattctct
ggagggaagagtgattctctacctgccaagttggcgccgagccagggttgtcctctcacc
gaggggagactgcgaggctggtttggctccagtgactcccagaacaagccaaggctggaa
gtttcttctaaggtagaaagcgactcagacacccctcctcccctcccccctcgctccccc
attcccacccagtgctcttcttccactggccgtgcctcacccgacagtggccatcccact
aacaccttcaccccctttctgacacccaaccccatctctccctcaaaccccttcctcccg
tgtctgcagtgtaaccccttttttgaggacctcataaccgaagaggcccgaaggtcccct
tgcgccacctgctccccctgtcattccacagctttgccttgcatccccagtaccacccac
gatgtcgcagtgccaaagaaaatggccgccatacggcgcgagcggcccaggcctgtagcc
aggcagacatccctccctgccttactcccgagagcggtgactgccagcctcccgaatccg
ttcacctctcgctccatatcagagagcttgggaagagaatgcgacgagtcctttgacgcc
tttgcgtccagcaggctgaattctccaaagagctctcctaccaatcacccttcgaatgca
accttgtggcaagctcaagtaagaagcactcctccacataagggtaacactattccaccc
attgaggagatgcggatgagtgaagaagaagcagagcctccaccgttgcctccacggagg
cccataacaagacctttggtaaacaagagatcttctgacagctggttgcacaggggccag
gagctggctgtgcagaaagaggcctgtctcctgtcacaaacgggcgcagcttccctgcag
cacacaagagaaggcgggcacaagagatgcacaccaagtccccacctgtacccaagctta
ggcaaagaccttctcgtcagcagtgacatgtccgactttcataccgaacactcacagcat
tatgccaatatttctccagagtctccatctccattcaagtctgaagatgacttcaagaac
ttcgaagacctccatgccaaagtagccccaaacgtcagaagccccatgagtgccaggtta
aggcctggtgtctctctgcatgcttccagtccctcctctgtggccccctccctggtgact
gaaactaatgcccaggctaagttactccccacccccgggccctcctccatccatcacccc
ccaatcttgagacccagcaccggagccaatgccacctttgctattgccccctgcacctct
tcctccttctcctcctcctcttctacctcctccaccactgtccagcccctggtcgatgca
cggcacacacttttacctgaggagacccagccagctagcagcctgccccgacaagagagc
agcccccacccagtgaagcccttgaccaccacagccagtcagggggagaagaaagagggc
cggtcatttctagagaagctcaagtcttccatccactcaggcctcgccgccaagcagaca
ctggctgaggctgagactgagattgaggaatcattaacggacaggtctgcccagtacgag
cagctgaccaaaatggagctgatctcccttctgctgcagcagcagatggatatggagaac
cagaaggcggcctcagaacagcaggcggtgccgcttaagaaacacgaggcggagatgaag
aagatcaaggcgcaggtgcgcgacctggaggactacatcgacaggctgctggtgcagatc
atggagcagacacccacactccttcaagtgcgctcccgacacaagtga
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