Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139365999
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Entry
139365999 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-4
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
ocla04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139365999
04082 Neuroactive ligand signaling
139365999
04519 Cadherin signaling
139365999
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139365999
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139365999
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Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
SAP130_C
Motif
Other DBs
NCBI-GeneID:
139365999
NCBI-ProteinID:
XP_070959172
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All DBs
Position
14:15150003..15160690
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AA seq
555 aa
AA seq
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MVSAKKEMVTAMYPSYISTLFYLFCLTACVKRISGTIKKDERIYPENFTRILDRLLDGYD
NRLRPGFGGPVTEVKTDIYVTSFGPVSDVEMEYTMDVFFRQTWMDRRLRYEGPIEILRLN
NMMVSNVWTPDTFFRNGKKSVAHNMTAPNRLFRIMKNGTILYTMRLTISAECPMKLVDFP
MDGHACPLKFGSYAYPKTEMIYTWTKGPQYSVEVPPESSSLVQYDLIGHTVSSEEVKSIT
GEYVVMTVHFHLKRKMGYFMIQTYIPCIMTVILSQVSFWINKESVPARTVFGITTVLTMT
TLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFTNAEMERLKRKPAKCPP
APQTTPVKVKDMEEVLQHNPDTNGNLRKRMNYMSQQDIQKAESYSTAATGVTRRQPQSGQ
SSSSTGSTGDTIILPHSSPGPASQPNTTFTTLSVKNTPPAPPTTPTIPANQSQPTADSSL
QDLLGPRLEHIQLMGKNEPKQSPCSQPTTTGMGGTSKIDKYARILFPVSFGAFNMVYWVV
YLSKDTMEAKFRGQI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggtttctgccaagaaggagatggtgactgcgatgtaccccagttatatttcgactctc
ttctaccttttctgcctgactgcttgtgtaaagagaatatctggaacgataaaaaaggat
gagagaatatatcccgagaatttcacacgcattttagaccgactactggacgggtatgac
aacagactgcgacctggatttggtggtccagtgacagaggtgaaaacagacatttatgtg
acaagtttcgggcctgtctctgatgttgaaatggagtacaccatggacgtgttcttcaga
cagacatggatggacaggaggctgaggtatgaggggcctatcgagatcctccgcctcaac
aacatgatggtctccaatgtgtggactccagacaccttcttcaggaatggcaagaagtct
gtggcccacaacatgactgcccccaacaggctattccgcattatgaagaacggcaccatt
ctttacaccatgaggttgactatcagcgcagagtgtcccatgaagctggttgacttcccc
atggatggacatgcatgccctctcaagtttggaagctatgcataccctaaaacagagatg
atctatacctggaccaaaggaccacagtattcagtggaggttcccccagaatcctccagc
ctagtgcagtacgatctcattggccacactgtcagtagtgaagaggtcaagtcaatcaca
ggtgaatacgtggtgatgacagtgcacttccacttgaagcggaaaatgggctacttcatg
attcagacgtatatcccctgcatcatgacagtaatcctctctcaagtgtccttctggata
aataaagaatcagtcccggctcgaacagtcttcggcatcaccacagtcttgaccatgacc
acgttgagcatcagcgcgcgccactccctccccaaggtctcctacgccacagccatggac
tggtttattgccgtgtgttttgcctttgtcttctccgccctcatcgagttcgctgccgtc
aactactttaccaacgcggagatggaaagactgaaaaggaagccggcaaaatgcccaccg
gcaccccaaacaaccccagtgaaagtgaaggatatggaggaagttctgcagcataaccct
gataccaatgggaaccttcgcaaacggatgaactatatgtctcagcaagacatccagaaa
gctgagtcatacagcacagcagctacaggggtaaccaggagacaaccccagtctggccaa
tcgtcttcatccacggggtcgactggggacaccatcatcctaccccactccagccccggc
cctgccagccaaccgaacaccaccttcaccaccctgtccgtcaagaacacgcccccggct
ccacccaccaccccgacaataccagccaatcagagccagcccactgctgactcctccctc
caggacctcctaggacctagattggagcacattcaactgatgggtaaaaatgagcccaag
cagtcgccatgctcccagccgaccaccaccggtatgggcgggaccagtaaaatcgataag
tacgctcgcatcctgttcccagtgtccttcggagccttcaacatggtctactgggtggtt
tacttgtccaaagacactatggaggccaaatttcgaggccaaatctag
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