Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366000
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Entry
139366000 CDS
T10872
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-2-like
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139366000
04082 Neuroactive ligand signaling
139366000
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139366000
Ion channels [BR:
ocla04040
]
Ligand-gated channels
GABA-A
139366000
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GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
139366000
NCBI-ProteinID:
XP_070959173
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All DBs
Position
14:15176492..15242740
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AA seq
455 aa
AA seq
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MRNRGYICQCLLICLTLTLLLQTRPVIADPTTDAFKNNITLFTRILDRLLDGYDNRLRPG
LGDRITEVNTNVYVTSFGPVSDTDMEYTIDVFFRQSWKDERLKFDGPMNILRLNNLMASK
IWTPDTFFHNGKKSVAHNMTMPNKLLRIQDDGTLLYTMRLTVHAECPMHLEDFPMDFHSC
PLKFGSYAYTMSEVTYVWTSKAADSVVVEGESSRLNQYDLLGQTVGQETIKSSTGEYTVM
TAHFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISA
RNSLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRSWAWDGKSIVNDKKKEKAST
MKKNNAYAVAVANYAPNITKDSGLSTIAKGGAVDPNMAVGKVGGKADPKKTFNSVSKIDR
ISRIMFPVLFSSFNLVYWATYLNREPYIKDMVPST
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatagaggctacatttgtcaatgtctactcatctgcctcacactgacgctcctc
ttgcaaacgaggccagtgattgctgatcctacaacagatgccttcaagaacaatatcact
ctcttcacacggatccttgacagacttctagatggctatgataatcgtcttcgacccggc
cttggggatcgtataacagaggtgaataccaatgtctacgtcaccagctttggcccagtt
tcagatacagacatggaatacactatagacgtgttcttccggcaaagctggaaagacgag
aggttaaaattcgacgggcccatgaacatactgcggctgaacaacttgatggccagtaaa
atatggacgccagacacgttcttccacaatgggaagaagtcagtggctcacaacatgacc
atgcccaataaactactgaggattcaagacgatggcaccctgctttacaccatgaggttg
acggttcacgcagagtgtccgatgcatctggaggacttccccatggacttccactcatgt
cccctgaagtttggcagctatgcctatacaatgtcagaggtgacttacgtctggactagt
aaggctgccgactctgtggtggtggaaggagagagctcccgtttgaaccagtacgacctg
ctcggccaaacagtgggccaagaaaccatcaagtccagcacaggcgaatacactgtcatg
acggcacatttccatttgaagcggaagattggatactttgtgatccagacctatctacca
tgcattatgaccgtcatcctctcccaagtgtccttctggctgaacagagagtccgtgcca
gctaggactgtgtttggtgtaaccactgtcctgacaatgaccaccctgagtataagtgct
cgtaactccctccccaaggtggcctacgccacggccatggactggttcatcgctgtctgc
tacgcctttgtcttctctgcccttatcgagtttgccaccgtcaactacttcacaaagcgc
agctgggcctgggatgggaagagcattgtgaatgacaagaaaaaagagaaggcctccacc
atgaagaagaacaacgcgtatgccgtggcggtggccaactatgcgcccaacatcaccaag
gactctgggttgtccaccatcgccaagggcggcgccgttgaccccaacatggcggttggc
aaggtgggtggcaaggcagacccaaagaagactttcaacagtgtgagcaaaatcgatagg
atttcaaggattatgttccctgtcctgtttagcagcttcaatttagtctactgggccacg
tacctaaacagagaaccgtatataaaggatatggtgccctcaacctag
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