Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366109
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Entry
139366109 CDS
T10872
Name
(RefSeq) highly divergent homeobox-like isoform X1
KO
K24884
highly divergent homeobox
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139366109
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
139366109
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Homeodomain
DUF8371
Motif
Other DBs
NCBI-GeneID:
139366109
NCBI-ProteinID:
XP_070959310
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All DBs
Position
14:41845756..41892563
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AA seq
780 aa
AA seq
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MADLPPCSSSSMEEWQEKRGLQTMNLRSVFTLEQQRVLDSYYDNGMTNQSKSCFQLILQC
SQETKLDFSVVRTWVGNKRRKLASRADQNTGMSHSFSFSNHSLAGGAVSNHMLTGGALVA
GAMLTGEMAAAQNIQRGSSHLPPSSSFPSASSSSSSSPLSSVNNNNDVILTGIYSLGSTS
RSQPTVKPLSCHSDSELPAHVHQTLLNHSEHRRNSSVSSLLQLHSRSGTMSLPRCKPLSL
SSSPSFSSSPSQPIDNLSKRCGFTTGGAGWAVGRAGSGGGVPRSWARQYGSLQSGPCRSQ
LQPTPHSNPQTLQPHPPRPHPSKPPPSDHSPRIHQVFSLLERGEGEGLGQGQPSDSSRQE
RHRQSTRPLDAIGCLSIAMETGDEEDEWRREEELSNMAATTHGDLQRGQGVRDSLSPSSE
QGSGGRDLTSLSLVLSSSRPGPYPRDSYPVTTTLQTSPSIQVPVSPSAPWLISNSRKRTL
QDRTQFSDVDLGQLKRYWDRGMTSLGSVCREKINAAANQLNVDTEIVKTWIGNRRRKYRL
MGIKIPPPKDGPALFLTSQEGEKSPSALSSDGEGLRTPELGDNLNDGASFCLSEDGTSQS
YQREEENVVEEESSSAPMAHSVKIEVIDDDDDDGVEMVGSDMENMQNLLEFKLGEVQYLE
SQLENQNQRYYELETFTKSLLTAVRTNNLDRQQELLASLPQPADQDWDMSPEGGANSISI
TTHSADNHDSPLAARSNDETPSVNPNKDLPLVTLNEDGSLIAELNESSVSEELETETGPE
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atggctgatctgcccccctgcagtagcagcagtatggaggaatggcaggagaaacgaggt
ttgcagacgatgaacctgcggtctgtgttcacactggagcagcagcgagtcctggatagc
tactatgacaacgggatgaccaatcagagcaagagctgcttccagctgatccttcagtgt
tctcaggagaccaaattggacttcagcgtggtgcggacctgggtgggcaacaagaggcgg
aagctggcctccagggccgaccagaacacaggcatgtcccactccttttccttctccaat
cacagcctggctgggggagctgtgtccaaccacatgctaacgggcggggctctagtggcg
ggcgcaatgctgacaggggagatggcagcagctcagaatatccagagaggatcctcccac
ctccctccatcctcctccttcccctctgcctcctcctcttcctcctcctctcctctcagc
tctgtcaacaacaacaacgatgtcatcctgacagggatttactctctaggctccacttct
cgttcccagcccactgttaagcctctctcctgtcactctgactctgagctccctgcacat
gtccatcaaactctgctcaaccattcagagcacaggaggaatagttctgtctcctccctc
ctccagctccattctagatcgggtaccatgtcacttcctcgctgtaaacccctctccctc
tcctcttccccctccttctcctcatcccccagccaacccatcgacaatctgtccaagagg
tgtggtttcaccactggtggggcagggtgggcagtaggaagggctgggtcaggggggggg
gtacctcggagctgggctagacagtatggttctctccagtccggcccctgtcgctcccag
ctccagcccacgcctcactccaacccccagactctccaacctcaccccccaaggccccat
ccttccaaacctcccccttcagaccactccccccgcattcatcaggtcttcagcctatta
gagaggggggaaggggagggactaggacaaggacagccttctgatagcagcaggcaagag
agacacagacagtctacccgccccttggacgctattggctgcctctcaatcgccatggag
acgggtgatgaagaggatgagtggcggagggaggaagagttatccaacatggctgccacg
acccacggggacctccagagaggccagggggtgagggacagcctcagccccagcagcgaa
cagggatctgggggtagagacctcacatccctctccctggtcctcagcagctccaggcct
ggtccatatcctcgggacagctacccagttactacaacactacagacctcccctagtata
caggttccagtcagtccctctgctccgtggctcatcagtaactccaggaagagaactcta
caggacaggacccagttcagtgatgtggacctgggccagttgaagcggtactgggaccga
gggatgaccagtctgggttctgtctgcagagagaagatcaacgcagcagccaatcagctc
aacgtagacactgagatagtcaagacgtggattgggaaccggaggaggaagtaccgtctg
atgggcataaagatcccgccccctaaagatgggccggccttgttcctgacatcacaggaa
ggggagaagtctccctctgcactgagttccgatggggaggggcttagaacgcccgagctg
ggagacaacctaaacgatggagcgtccttctgtctgtccgaggatgggaccagtcagtcg
taccagagagaagaagagaacgtagtagaggaggagagcagcagcgcccccatggctcac
agcgtgaagatagaggtgattgatgatgatgatgatgatggtgttgagatggtcggatct
gatatggaaaacatgcagaacctcctggagtttaagcttggggaggtgcagtatctggag
agccaactagagaatcagaatcagagatattatgagttggagaccttcaccaagagtctt
ctgaccgctgtaaggaccaacaacctggacagacaacaggagctcctagccagtctacct
cagcctgcagatcaggactgggacatgagtccagagggaggagccaactccatctccata
acaacacactctgcagacaatcacgattccccgttggccgccaggagcaacgacgaaaca
ccatcggtcaaccccaacaaggacctcccattggtcactctaaacgaagacggttcattg
attgctgagctcaacgagtcgtctgtatcagaggaactagagactgagaccggaccagag
tga
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