KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366164
Entry
139366164         CDS       T10872                                 
Name
(RefSeq) pre-mRNA-splicing factor RBM22-like isoform X1
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139366164
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ocla03041]
    139366164
Spliceosome [BR:ocla03041]
 Complex B
  Other components
   Prp19-related factors
    139366164
 Complex C
    139366164
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 zf_CCCH_4 Torus RRM_occluded zf-CCCH_2 Nup35_RRM_2 zf-CCCH zf-CCCH_4 zf-CCCH_10 RRM_YTH1 zf-CCCH_12 RRM_3 zf-CCCH_PARP12
Other DBs
NCBI-GeneID: 139366164
NCBI-ProteinID: XP_070959437
LinkDB
Position
14:complement(5687526..5706327)
AA seq 421 aa
MATSLGANTYNRQNWEDADFPILCQTCLGENPYIRMSKEKYGKECKICARPFTVFRWCPG
TRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLDIKDDVPKSDVNKEYYTQN
AEREIGNSDGTRPVGLLGKAPSSSEMLLKLARTTPYYKRNRPHICSFWVKGECKRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVADKLLKRASTMPRLDTPEDKTITTLYVGGMG
DTISDAELRNHFYQFGEIRTTTIVQRQQCAFIQFATRQAAELAAEKSFNKLIINGRRLTV
KWGRSQAARGKEAYQDGVSEMGTRLDPVPGLPGALPPPPALEEDVPTNYFNLDPGTSPNV
MNISLPPPPGINPPPPGFGAPMFHMGSMGPPPPMGMRPPGHIHYPSQDPQRMGAHAARHG
D
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggcgacgtccctaggagctaacacatacaacagacagaattgggaagacgcggatttc
ccaattctgtgtcagacatgtttgggggaaaatccatacatccgcatgagcaaagagaag
tatgggaaagaatgcaagatctgtgctcgtcccttcactgtgttccgctggtgtccagga
acaaggatgcgcttcaagaagacagaggtgtgtcagacctgcagcaagatgaagaacgtc
tgtcagacctgtctacttgacctggagtacggtttgccaatccaggtcagggacaccggg
ctggacatcaaggatgatgtgccgaagtcagacgtgaacaaggagtactacacacagaat
gctgagagagagatagggaactctgatgggacacggccagtgggtctgctgggtaaggcc
cccagctccagtgagatgctgctgaagctggcccgtactacgccctactacaagaggaac
agaccccacatctgctccttctgggtgaagggagagtgcaagagaggagaagagtgtcct
tataggcacgagaagcccacagacccagatgatcccctggcagaccagaacattaaggac
cgttactatggtattaatgacccagtggctgacaagctgctgaaacgggcctccaccatg
cccagactggacacgcctgaggacaagaccatcaccacactctatgtaggggggatggga
gataccatctcagatgcagagctgaggaatcacttctatcagtttggggagatccggacc
accaccattgtccagaggcagcagtgtgccttcatccagtttgccacacggcaggcagct
gagcttgctgcagagaagtccttcaacaagctcatcatcaacggacgcaggctcaccgtc
aagtggggcaggtctcaggcagccagaggaaaggaggcctaccaggatggggtcagtgag
atgggaaccagattagaccctgtgccaggactgcctggagctctccccccaccccctgct
ctggaagaagacgttcccactaactacttcaatttggatcctggtacatctcctaatgtc
atgaacatctctctgcccccaccgcccggcatcaacccaccacctccaggttttggtgcg
cctatgttccacatgggttcgatgggtccccctcctcccatgggcatgagacccccagga
cacatccactacccgtcccaggacccccagcgcatgggagcccacgctgcccgccatggc
gactag

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