Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366179
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Entry
139366179 CDS
T10872
Name
(RefSeq) vascular cell adhesion protein 1-like isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
Brite
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
VCAM
139366179
CD molecules [BR:
ocla04090
]
Proteins
139366179
Lectins [BR:
ocla04091
]
I-type lectins (Siglecs)
139366179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
C2-set_2
C1-set
ICAM_N
ICAM1_3_5_D2
REJ
Ig_C17orf99
Pedibin
Motif
Other DBs
NCBI-GeneID:
139366179
NCBI-ProteinID:
XP_070959509
LinkDB
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Position
1:complement(14409607..14422801)
Genome browser
AA seq
806 aa
AA seq
DB search
MSLLWIVILPVTAFAFHVELKPKSAFFRVGDRQELRCSVKDCNEKVTMSWALLGDKPMFA
KIHTSGSESVAAFDPVMTVHDDILLCKVSCGALTKQQRVVVKVYSFPEAPVISGYDHLLL
GQSNTLTCEVIDAYPVEHLRLEWLRGESMLQTDAESIVSTYRFTPTPEDKDTSITCRASH
DQDGVPDEEKTKETTVSLTVLYAPQNISISEPTAVRVGSSLTLSCHAEGNPRPDTQWKAI
GPDGQAVIVGQSEELVLTEMTLVDAGQYECVVSNTIGNITASVNVIVQAPPTNTTITVSP
ASEVKEGESVTVSCLSDGAPVVRMVLRRLSEDQDVELQSSNGFSTSFTLSSALLADSALY
QCQAFNEHGSQKVSALLSVEEYPLEVAMDVGVTAEMGSNLVLSCRAWGCPQPAFYWRSML
DMPVHSRAHTQDSLSQLYLGPLGLINEQAYTCEAKCGSVIKAKHAEVKVFSFPSDPIIEN
TGPFLEHGVGIFFCSVANVYPASLLQIQWLDGEIELASEMGQYSSELQNVTSMLSFSIGP
EDQGRQITCRVSLQMDEVPQSGRERQAVTVLELHYAPRETTITVSPANEVKEGESVAVSC
LSDGVPVGRMVLRRLSEDQDMELQSSNGSSTSFTLSSALLADSALYRCEAFNEHGSQRAS
TYITVKAPPRNTTVLIYPSAEVQEGQNVTICCHSVSFPPPAVVLRKLDNGTELYSPDGNF
LLVNLTPNDTGLYQVNVTNDLGYETEIFSINVIEKHSSSSPDWNHVVIPAVCVGIMVTTT
GLVLDYLRRARRKGFYELAKCKPGSA
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgttatggatagtgatactaccagtaacagcctttgcatttcatgtggagcta
aaaccaaagagtgcatttttcagagttggtgataggcaggagctgcgatgttcggtgaag
gattgtaacgaaaaggttactatgtcctgggctttgctgggggataagcccatgtttgct
aaaatacacacctcaggatcggaatccgtggcggcctttgaccctgtgatgacagtacat
gatgacatacttctctgcaaagtcagttgcggagcattgaccaaacaacagcgtgtggtt
gtcaaagtgtactcatttccagaggcacctgtcatatcaggctacgaccatcttctcttg
ggccagtccaacactctgacatgtgaggtgatagatgcttatcccgtggagcacctgcga
cttgagtggctgcgaggagaaagcatgctccagacagacgcagagtccattgtatctacc
tacaggttcacgcccaccccagaggacaaagacacaagcatcacatgcagagcctctcac
gatcaggatggtgtgcctgatgaagagaagaccaaggaaaccactgtatctctcacagtg
ctttatgcgccacagaatatatcaatatctgagccgactgctgtgagagttggctccagt
ctcacgttgtcatgccatgctgaagggaaccccagaccagatacacagtggaaggccatt
ggtccagatggacaggctgttattgtggggcagagcgaggagcttgtccttacagagatg
acactggtggatgctggtcaatatgagtgtgtggtgagcaacaccattggaaacatcaca
gccagcgtgaacgtcattgttcaagctcccccaaccaacaccaccatcacagtgagccca
gccagcgaggtgaaggaaggggagagcgtgacggtgtcctgcctgtcggacggagctccg
gtggtacgtatggtgctgaggagactctctgaggaccaggatgtagaactccagtccagc
aacggattctccacttccttcaccctctcctctgccctgctagcagactctgctctctac
cagtgccaggccttcaatgaacacggcagtcagaaagtcagcgccttgctctctgttgaa
gaatatcccctggaggtggcgatggatgtgggggtgacggctgagatgggatccaacctg
gtgctctcctgccgggcttggggctgtccccagccagccttctactggaggagcatgctg
gacatgcccgtccatagccgtgcacacacccaggactccctctcccagctctacctgggc
ccacttgggctgatcaacgagcaagcctacacctgtgaggccaagtgtggctctgtcatc
aaggccaagcacgctgaggtcaaggtcttctctttcccctcggaccctatcatcgagaac
actggcccctttctggaacacggtgttggcatctttttttgttcggtagccaacgtctac
ccagccagtctcctgcagatccagtggcttgatggggaaatcgagctagcctccgagatg
ggacagtattccagtgaactccagaatgtgacgtcaatgctttctttctcgattggaccg
gaggaccagggcagacagatcacctgcagagtcagtcttcagatggatgaagtccctcag
agtgggagagagaggcaggcagtgactgtactggagctccactatgcccccagggaaacc
accatcacagtgagcccagccaatgaggtgaaggaaggggagagcgtggcggtgtcctgc
ctgtcggacggagttccggtgggacgtatggtgctgaggagactctctgaggaccaggat
atggaactccagtccagcaatggctcctccacctccttcaccctctcctctgccctgcta
gcagactctgctctctaccggtgcgaggctttcaatgagcacggcagccagcgagctagc
acatacattacagtcaaagcacctcctaggaacacaacagtcttgatatatccatctgct
gaggtgcaggaaggccaaaatgtcaccatctgctgtcactctgtcagtttccccccacct
gctgtggttttaaggaaactggataatggcacagagctctactccccggatgggaacttc
ctgctggttaaccttacgcccaatgatacaggcctataccaggtgaatgtcaccaatgac
ctgggttatgagaccgagatcttcagcatcaacgtcatagagaagcactccagttcttca
ccagactggaaccacgtagtcattcctgctgtctgtgtgggtatcatggtgaccaccacg
ggcctagtcctggactacctgaggagagccaggaggaagggcttctatgagctggcaaag
tgcaagcctgggtctgcatag
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