Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366235
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Entry
139366235 CDS
T10872
Name
(RefSeq) transcription factor Sox-3
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139366235
Transcription factors [BR:
ocla03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
139366235
BRITE hierarchy
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Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
139366235
NCBI-ProteinID:
XP_070959593
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All DBs
Position
14:complement(9863414..9865144)
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AA seq
300 aa
AA seq
DB search
MYNMMETEIKSPLPQSNSGSAAGNKNNSANDQDRVKRPMNAFMVWSRGQRRKMAQENPKM
HNSEISKRLGADWKLLTDAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDKYS
LPGGLLAPGANAVNNGVSVGQRMDSYAHMNGWTNSAYSLMQDQLAYPPHHSMNSPQIQQM
HRYEMAGLQYPMMSSAQTYMNAASTYSMSPAYTQQTSNAMGLGSMASVCKTEPSSPPPAI
TSHSQRACLGDLRDMISMYLPPGGDGADHSSLQTSRLHSVHPHYQTAGTGVNGTLPLTHI
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaaaccgagatcaagagcccgctcccgcagtccaattcgggctcc
gctgcgggcaacaagaacaacagtgccaacgaccaggaccgggtgaagaggcctatgaac
gctttcatggtgtggtcccgtggacagcggagaaagatggcacaagagaaccctaaaatg
cacaactctgagatcagcaagcggctcggtgcagactggaaacttttgaccgacgcagag
aagagacccttcatcgacgaggccaagcgtctgcgcgccatgcacatgaaggagcatccg
gattacaaataccgtccccgcaggaagaccaaaaccctgctcaagaaagacaagtattct
ttgccaggaggacttctagcgccaggtgccaacgctgttaacaacggcgtctcggtggga
cagcggatggacagttatgcacacatgaatggctggacaaacagtgcgtactccctcatg
caggaccagttggcctaccctccgcatcacagcatgaacagccctcagatccagcagatg
caccggtatgagatggcagggctccagtaccccatgatgtcctcggcgcagacctacatg
aacgcagcgtccacgtacagcatgtccccagcatacacgcagcagacctccaacgccatg
ggcttgggctccatggcatccgtgtgcaagaccgagccgagctcacctccaccggcaatt
acctcccactcccagcgagcgtgtttgggggatctgagggatatgatcagcatgtacctg
cctccgggtggagacggcgcggatcactcgtcccttcagaccagtcggttacacagtgta
catccgcactatcagaccgcggggactggcgtgaacggaacgctacccctaacccacatt
tga
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