KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366319
Entry
139366319         CDS       T10872                                 
Name
(RefSeq) WD40 repeat-containing protein SMU1 isoform X1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ocla03041]
    139366319
Spliceosome [BR:ocla03041]
 Complex B
  Other components
   Complex B specific factors
    139366319
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_EML ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_ACSF4 Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_TEP1_C Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_Aladin Beta-prop_WDR41 WD40_MABP1-WDR62_1st Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_BBS7 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_WDR75_2nd Beta-prop_DCAF12 WD40_RFWD3 Beta-prop_IP5PC_F VPS8_N DUF7165 LisH_PAC1 PROPPIN Beta-prop_NOL10_N LisH
Other DBs
NCBI-GeneID: 139366319
NCBI-ProteinID: XP_070959775
LinkDB
Position
14:complement(13479658..13484208)
AA seq 555 aa
MSLEVESADVIRLIMQYLKENNLHRTLTTLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRVAIAQALAGEVSVVPPSRLMALLGQVGDMFLYTWNIWY
FHVNSAHSLIYDQDNIMQISILTTISVSQSLKWQQHQGLLPPGMTIDLFRGKAAVKDVEE
ERFPTQLTRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEVWNFTTGKIRKDLKYQAQD
NFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLRRFERAHSKGVTCLSFCKD
SSQLLSASFDQTIRVHGLKSGKSLKEFRGHSSFVNEATFTPDGHHIISASSDGTVKVWNM
KTTECTNTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSG
KREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNL
ISTYSEDGLLKLWKP
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgtctttggaggtggaatcagccgacgtgattcgtctgataatgcagtacctgaaagag
aacaatcttcaccggacattgaccaccctacaggaagagaccacggtgtctttgaacact
gtggacagtatcgagagtttcgtggcagacatcaacagtggccattgggatactgtgctg
caagctattcagtccctcaagctccctgacaagactttgatagacttgtatgaacaggtg
gtgttggagctcattgagttgagagagttgggagcagccaggtctttgctaaggcaaaca
gaccccatgatcatgctgaagcagacgcaaccagagaggtacattcacctggagaacctg
ctggctcgctcctactttgaccccagagaggcctacccagatggcagcagtaaggagaaa
cgacgggtggccatcgcccaggccctggccggggaggtcagcgtggtgcccccctcccgt
ctcatggccttgctgggacaggtgggtgacatgttcctatacacctggaatatatggtat
tttcatgttaattcagcacatagtctgatctacgaccaggataatattatgcagattagt
attttaaccaccatctctgtctctcagtccctaaaatggcaacagcaccagggtctcctg
cccccaggtatgaccattgacctgtttaggggcaaggcagccgtgaaggacgtggaggag
gagcgcttccccacacagctcactagacacatcaagtttgggcagaagtcccacgtggag
tgttcccgcttctcccctgatggtcagtacttagtcacaggatcagtggatggttttatc
gaggtctggaacttcaccactggcaaaatcagaaaggatctcaagtaccaggcgcaggat
aacttcatgatgatggatgatgcagtgctgtgtatgtgcttcagcagggacacagagatg
ctggccacaggggcccaggacggcaaaataaaggtgtggaagatccagagtggtcagtgc
ttgcggcgctttgagcgcgcccacagtaaaggtgtcacgtgcctcagtttctgcaaggac
agcagccagctgctcagtgcttccttcgaccagaccatcagggttcacggattgaagtcg
ggcaagtcgttgaaagagttccgaggacactcctcatttgttaatgaagcgacattcaca
cctgacggccaccatatcatcagcgcttcctctgacggcactgtgaaggtgtggaacatg
aagaccacagaatgcactaacaccttcaagtccctgggcacctcggccggcaccgacatc
acagtcaacaacgtcatccttctgcccaagaacccagagcactttgtggtgtgcaaccgc
tccaacactgttgtcatcatgaacatgcagggccagattgtgagaagtttcagctctggt
aagagggagggtggagactttgtctgctgtacactgtctccacgtggcgagtggatatac
tgtgtaggagaggactttgtgctctactgcttcagcacagtcaccggcaagctggagaga
accctaacagtccatgagaaggatgtgattggcatcgcccaccacccccatcagaaccta
atctccacgtacagtgaggacggcctactcaagctctggaaaccctga

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