Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366341
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Entry
139366341 CDS
T10872
Name
(RefSeq) protocadherin-12-like
KO
K16499
protocadherin delta 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139366341
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139366341
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
139366341
NCBI-ProteinID:
XP_070959811
LinkDB
All DBs
Position
14:complement(15277477..15297656)
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AA seq
1189 aa
AA seq
DB search
MLDRTVISHTVMLLALLLVLCLASGAQCSDPAPLTVMYRVWEEQPVGTRVGHLVDDLRQR
GETEALEDFQVVEHGQALPFSIGASDGTLSTLGQLDREELCRGSDLCELAFSVLYRKGGA
IHFLRVRVEVMDLNDHSPTFPSGKQELEISETATLRMRIPLDRAVDPDAGPNGLQTYSLS
VNQHFALDVRSTADGPKQAELVVIKELDREVQSSFELTLVAWDKGNPPRSGSTLVRVKVL
DSNDNSPMFEDGTPTVELTEDTARGTIVINLKATDPDQGANGEVEYSLSKHAPPEVQKLF
SVHPQSGAVTLKGELDYEDKHSYEVDIQARDLGPNAIPSHCKLHVKLRDVNDNAPRIHVT
WTPPDSPVATVLEGAPEDTFLALVMVSDADSGDNGNVHAHIWHGSGHFRLKKIHGDNYMI
VTNGTLDREKVMEYNLTLLAQDYGDPPLSCVRYLVVHVLDENDNAPVFSKSHYRASFKEN
NAVGLQVLKVEANDVDIELSGRVSYSIRESNELGTPTASFAIHPISGVVSAQQSLDYDES
PTYSFIVEAIDHGHPPLTSTATVLIEIQDVNDNYPVIKEPMPKKGIAFVSVPVNAEKGEM
VTELGDGAEEGSTYPPIDRSAQNGLSGFLATTIKANDLDSGLNGRLSYMITDENPTGLFR
LDDTTGQLYVNTTNATELIGKTFKVDIAVSDNGSPRLVTKVTLEVTFVNLRDHLKNSAPG
NRGHLSFTMMMAICLGASCLLLLLAVALVTTFCRPTKRDNHAYNCRMAESTYTRHPRRPQ
KNIRKTDIQLVPVLRGRREDPPEDEDEAQPLSPMPLVVEEQHTERQYSIATSMHPTVHSQ
AYPDGGATLPVSHTRTLRKPGSIELDGTLPRTPTTPYRTLRKARNPSLSSSLSQNSTLRR
HGNSEIQARPDVEEPEPSSPVSQVATLRKSKNTDTRGGHDAEDHRRILRNLVRLSMAAFG
DNSIELSAASPEVQQISQLLSLLHQGQLQPRPNFRGNKYSHRAGRTGVQDTDCQSTKDSG
HGESEAGDMDWDTGRDSPVNLLLEEDLNTLLNNPDDVFADIEDPAWMARLSLPLTADYHK
NIFVPDGPPSSDTHCSPDTLDDSSFSTFGKTPEKDGPLGGALLSEVNTLFNMLLTQKGDS
QSRPSPDVLYRLSAAYRRSLGMDGAANAPRNSGNPEKTSPLAHCSAQFP
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgctggacaggacagtaatatctcacacagtcatgctgctggctctactgctggttctg
tgtcttgcttctggggcccagtgttcagacccggccccattaacagttatgtacagagtc
tgggaggagcagcctgtgggcaccagggttggccatctggtcgatgacctgcgtcagaga
ggcgagacagaggcattggaggatttccaggtcgtggagcatggtcaagccctgcctttc
tccatcggagcgagcgacggaactctctccactctgggacagctggaccgggaggagctg
tgtcgaggctcggacctgtgtgagttggccttcagtgtcctctacaggaaaggtggtgct
atccactttctgagggtgcgggtggaggtgatggacctgaatgaccacagccccaccttc
cccagtggcaagcaggaattggagatctctgagacggccacgttgaggatgcggattccc
ctggaccgagccgtggacccagatgccggccccaatggactgcagacctactcactgtcc
gttaaccagcactttgccctggatgtaaggagcactgcggatgggccaaagcaagcagag
ctggtggtgataaaggagctggacagggaggtgcagtcctccttcgagctgactctggtg
gcctgggacaaggggaaccctcccaggtcgggcagtactctggtcagagtcaaagtcttg
gactctaacgataacagccccatgtttgaggatggtacccccaccgtggaactaactgag
gacacagcccgtgggactatcgtcatcaacctcaaggccacggaccctgatcaaggggcc
aatggggaggttgagtactctctaagcaaacatgctccacctgaggtgcagaagcttttc
agtgtccacccccagagtggggcagtgaccttaaaaggcgaactggactatgaggacaaa
cactcttatgaggtggacatccaggctcgcgatcttgggcccaacgccatcccttctcac
tgtaaactacacgtcaagctgagggacgtcaatgataatgcaccaaggatccacgtgact
tggacacctcctgattccccagtggcaactgttttagagggtgcaccggaggacacattc
ctcgcactggtgatggtctctgatgcagactccggggacaatgggaatgtgcacgcccac
atctggcacggatcaggccacttccgcctcaagaaaatccatggcgacaactacatgatt
gtaaccaatggcaccctggatcgcgaaaaggtcatggagtataacctcacgttacttgcc
caggattatggtgaccctccactgtcatgtgttagatacctagttgtccatgtgttggat
gagaatgacaatgcccctgtgttctccaagtcccactacagggcttccttcaaggagaac
aatgccgtaggcctacaggtcctcaaggtagaagctaatgatgtggacattgagctcagc
ggcagggtgtcctactccatccgagagtccaatgaactgggaactcccacggcgtctttt
gccatccaccccatcagtggcgtagtcagcgcccagcagtcattggactatgatgagtct
cccacctactccttcatcgtggaggccatagaccatgggcatccacccctcaccagcact
gccacggtactcatcgagatccaggatgtcaatgacaactaccccgtcatcaaggagcca
atgccaaagaaaggcatagcctttgtgagcgtccctgtcaacgcagagaaaggggagatg
gtgacagagctaggggatggtgctgaagaaggctccacctatcctccgatcgatcgctct
gcacaaaatggactttcaggattcctggccactaccatcaaggccaacgatctagactct
ggcctcaatggaagactcagctacatgatcacagatgaaaaccccacaggactgttcaga
cttgacgacactactggacaactgtatgttaacacgaccaatgcgacagagctcattggg
aagactttcaaagtggatatcgctgtatcggacaatggctctccaaggctagtgacaaag
gtcaccttggaggtgactttcgtcaacttgcgggaccatctgaagaactcagcccctggt
aaccgtggccatctgagtttcaccatgatgatggccatatgccttggggccagctgcctc
ctgcttctcctggctgttgccctggtgaccaccttctgtcgacccacgaaacgagacaac
catgcctacaactgcaggatggctgagtccacctacacacgtcaccctcgccgtccacag
aagaacatcaggaagacggacatccagctggtgccagtcctgaggggacgaagggaggac
cctccggaagacgaggatgaagcccagcccctctcccctatgcccctggtggttgaagag
cagcacaccgaaaggcaatacagcatagccacctccatgcacccaacagtccactcccag
gcctaccctgatgggggcgcaacgctgccagtctcccataccagaacactcaggaaacct
gggagcatcgagctggacggcactctccctcgaacacccacgactccttaccgaaccctg
cgcaaggcaagaaacccttcattgtcctcctcactctctcagaacagcaccctgaggaga
catgggaactctgagatccaggctagacctgacgttgaagagccggaaccatcctcccca
gtgtcccaggtagcaacacttagaaagtccaagaacacagacaccagaggtggacatgat
gctgaagaccacagacggatactgaggaacttagtccgtctctccatggctgccttcgga
gacaactccatcgagctgtctgctgcctctccagaagtacagcagatctcccagctcctc
tccctgctccaccagggccagctgcagccgagacccaacttccgaggcaacaagtactcc
catcgcgctggcaggaccggcgttcaggacactgattgtcagagcaccaaggacagtggc
catggcgagagtgaagccggagacatggactgggacacgggtcgagactcccctgtcaac
ctgctactggaggaggaccttaacaccctgctcaacaaccctgatgacgtctttgctgac
atagaggaccctgcatggatggcccgcctctccctcccactcactgcagactaccacaag
aacatttttgtccccgacgggccaccgtcctccgacacccattgctccccagacaccctt
gacgactcctccttctccaccttcggcaagacgccggagaaggatggcccgctgggcggg
gccttgctctccgaggtcaacaccttgtttaacatgctcctgacccagaagggcgactcc
cagtcacgcccctcgccagatgtgctctacagattgtctgccgcctaccggcgctcactg
gggatggacggagctgccaatgcgccacggaactctgggaaccccgaaaagacgtcccct
ctggctcattgctcggcccaattcccttag
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