Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366387
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Entry
139366387 CDS
T10872
Name
(RefSeq) cullin-4B-like isoform X1
KO
K10609
cullin 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03420
Nucleotide excision repair
ocla04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
139366387
09124 Replication and repair
03420 Nucleotide excision repair
139366387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139366387
03400 DNA repair and recombination proteins [BR:
ocla03400
]
139366387
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139366387
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
139366387
DNA repair and recombination proteins [BR:
ocla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
139366387
TCR (transcription coupled repair) factors
Cul4-CSA complex
139366387
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
139366387
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cullin
Cullin_AB
Cullin_Nedd8
SecA_SW
PG_binding_4
Motif
Other DBs
NCBI-GeneID:
139366387
NCBI-ProteinID:
XP_070959924
LinkDB
All DBs
Position
14:19772695..19795927
Genome browser
AA seq
868 aa
AA seq
DB search
MISRLAIAIRICIHFFMFPIGLPSPNPPPPTQEARPAASDVNNDSSITPSKKRKINSSER
EDIDSISSSPKTTNYSSSSCTSTSQHIQKKLRFEDSVDFIGLDVKMAEESSASCSSNKMK
TVFLAGGVGHHANGLTKTAGSTTFSNSKPGAAKKLVIKNFKEKPKLPENYTHETWQKLKE
AVEAIQNSISIKYNLEELYQAVENLCSHKISAKLYKQLQVVCEDHIKAQIDQFREDALDS
TLFLKKIDKCWQDHCRQMIMIRSIFLFLDRTYVLQNSMLPSVWDMGLELFRFYIISDMKV
QSKTIDGILLLIERERSGETVDRSLLRSLLSMLSDLQIYQDSFEQRFLEETNRLYAAEGQ
RLMQEREVPDYLHHVNKRLEEEADRVITYLDQSTQKPLIATVEKQLLGEHLTATLQKGLN
HLLDENRIQDLCLLYQLFSRVRGGVLVLLQHWIEYIKAFGSTMVINPEKDKTMVQELLDF
KDKVDHIIHVCFMKNEKFVNAMKEAFETFINKRTNKPAELIAKHVDWKLRAGNKEATDEE
LEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFT
SKLEGMFKDMELSKDIMVQFKQCQNLPGNIELTVNILTMGYWPTYVPMEVHLLPEMVRLQ
EIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSLFQTLVLLMFNEGEEFTLE
EIKLATGIEDGELRRTLQSLACGKARVIHKVPKSKDVEDGDKFSCNDDFKHKLFRIKINQ
IQMKETVEEQASTTERVYQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPAD
LKKRIESLIDRDYMERDKENPNQYNYVA
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atgattagtagactggctatagctattagaatttgtattcattttttcatgtttccaata
ggtttaccttcccctaatcccccaccgccaacccaagaggctagaccagcagcttcagat
gtaaataacgacagcagtatcacgccttcgaagaagaggaaaataaacagttctgagagg
gaagacattgattcaatctcttcatctcctaaaaccacaaattattcatcttcctcctgc
acctccacttcgcaacacattcagaagaagttgaggttcgaagattcagtagatttcatt
ggactggatgtgaaaatggccgaggagtcgtctgcatcgtgttcttctaacaagatgaaa
acagtttttttggctgggggtgttgggcaccatgcaaacgggctgacgaaaacggcaggc
tccactaccttctccaacagcaaacctggcgctgcaaagaaactagtcatcaagaacttc
aaagaaaagcccaaattgccagagaactacacacacgagacctggcaaaagctaaaggag
gcggttgaggccattcagaacagcatttcaatcaagtacaatcttgaggagctctaccag
gctgtggagaacctctgctcccataagatatcagccaagctctacaaacaactgcaggtt
gtgtgtgaagaccacatcaaggcacaaatcgatcaattcagagaggatgcactggacagt
acactcttcctgaagaaaatagacaagtgttggcaagatcactgcagacaaatgatcatg
attagaagtatatttttgttcttggaccgcacctatgttttacaaaattcaatgctcccg
tcagtctgggacatgggcctggagttgtttaggttttacattatcagcgacatgaaggtc
cagagcaagaccatcgacggaatcctgctgctcatcgagagggagcgcagcggcgagacc
gtcgaccgtagcctgctgcggagcctattgagcatgctttctgacctgcagatttatcag
gactcctttgagcagcgctttttggaggagactaatcgtctgtatgccgctgagggacag
aggctgatgcaggagagagaggtcccagattatctccatcacgtcaacaaacgcttagag
gaggaagcagacagagtcatcacgtatctagaccagagcacacaaaaacctctcattgcc
actgtggaaaagcaactactgggtgaacatctcactgcaacactgcagaaaggcttgaat
cacctgctagatgagaacagaatccaggacttgtgtcttctctatcagctcttcagtcgg
gtgagagggggcgtgctagtcctcctacaacactggatcgagtacatcaaggcctttgga
agtacgatggtcattaaccctgagaaggacaagaccatggtacaggagctgctggacttc
aaggacaaggtggaccacatcatccacgtctgtttcatgaagaatgagaagtttgtcaat
gccatgaaggaagccttcgagaccttcatcaacaagaggacaaacaaacctgctgagctc
attgcaaaacacgtggattggaagctgagggcggggaacaaggaggccacggacgaggag
ctggagaagatgttggacaagatcatgatcatcttccgattcatttatggaaaagacgtt
tttgaggccttctacaagaaagatctggccaagaggttgctggtgggaaagagtgcctcc
gtggatgccgagaagtccatgctgtcgaaactgaaacatgaatgtggagcggcattcacc
agcaagctggaaggcatgttcaaggacatggagctttccaaggacatcatggtgcagttc
aaacagtgtcaaaacctccctggtaacattgagctgacggtgaacatcctcaccatggga
tactggcccacctacgtcccaatggaggtccatctgctcccagagatggtgcggctgcag
gagattttcaagacgttttacctcggcaagcacagtggcagaaagctccagtggcagtcg
acattaggccattgtgttttaaaagctgaatttaaagagggcaaaaaggagcttcaggta
tccctgtttcagacactagtgctgctcatgttcaatgaaggagaggaattcaccttagag
gagatcaagctagctacaggaatagaggatggcgagctgcggcggaccctgcagtcgttg
gcgtgtggcaaggcgcgcgtcatccataaagtccccaaaagcaaagacgtggaggacgga
gacaagttctcgtgtaacgatgacttcaaacacaaactcttcaggatcaagatcaaccag
atccagatgaaagaaacggtggaggagcaagccagcaccacggaacgagtttaccaggac
cggcagtatcagatcgatgccgccattgtcaggatcatgaagatgaggaagactctgagc
cataacctcttggtgtcggaagtgtacaaccaactcaagttccctgtcaagcctgctgac
ctaaagaagagaatagagtctctcattgacagagattacatggagcgcgacaaggagaac
cccaaccaatacaactatgtggcttaa
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